SMTL ID : 6qwg.1

Serial Femtosecond Crystallography Structure of Cu Nitrite Reductase from Achromobacter cycloclastes: Nitrite complex at Room Temperature

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-trimer

Ligands

3 x NO2: NITRITE ION(Non-covalent)

NO2.1: 8 residues within 4Å: Chain A: H.248, I.250, H.299, L.301 Chain C: D.91, H.93, H.128 Ligands: CU.9 No protein-ligand interaction detected (PLIP) NO2.4: 8 residues within 4Å: Chain A: D.91, H.93, H.128 Chain B: H.248, I.250, H.299, L.301 Ligands: CU.3 No protein-ligand interaction detected (PLIP) NO2.7: 8 residues within 4Å: Chain B: D.91, H.93, H.128 Chain C: H.248, I.250, H.299, L.301 Ligands: CU.6 No protein-ligand interaction detected (PLIP)

6 x CU: COPPER (II) ION(Non-covalent)

CU.2: 4 residues within 4Å: Chain A: H.88, C.129, H.138, M.143 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.88, A:C.129, A:H.138 CU.3: 4 residues within 4Å: Chain A: H.93, H.128 Chain B: H.299 Ligands: NO2.4 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A Metal complexes: B:H.299, A:H.93, A:H.128 CU.5: 4 residues within 4Å: Chain B: H.88, C.129, H.138, M.143 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.88, B:C.129, B:H.138 CU.6: 4 residues within 4Å: Chain B: H.93, H.128 Chain C: H.299 Ligands: NO2.7 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain C Metal complexes: B:H.93, B:H.128, C:H.299 CU.8: 4 residues within 4Å: Chain C: H.88, C.129, H.138, M.143 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:H.88, C:C.129, C:H.138 CU.9: 4 residues within 4Å: Chain A: H.299 Chain C: H.93, H.128 Ligands: NO2.1 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain C Metal complexes: A:H.299, C:H.93, C:H.128

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Moreno-Chicano, T. et al., High-throughput structures of protein-ligand complexes at room temperature using serial femtosecond crystallography. Iucrj (2019)

Release Date

2019-11-20

Peptides

Copper-containing nitrite reductase: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

Copper-containing nitrite reductase

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