SMTL ID : 6qwv.1 (1 other biounit)

SARM1 SAM1-2 domains

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.47 Å

Oligo State

homo-octamer

Ligands

17 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 4 residues within 4Å: Chain A: K.44, S.48, L.71, G.72 Ligand excluded by PLIP EDO.3: 5 residues within 4Å: Chain A: G.41, K.44, Y.45, R.81 Chain B: Q.53 Ligand excluded by PLIP EDO.4: 3 residues within 4Å: Chain B: L.60, G.120, C.143 Ligand excluded by PLIP EDO.5: 8 residues within 4Å: Chain B: A.93, N.94, Y.95, S.96, D.99, N.102, A.104, R.115 Ligand excluded by PLIP EDO.9: 5 residues within 4Å: Chain B: L.140, H.146, R.151 Chain C: Q.137, E.141 Ligand excluded by PLIP EDO.10: 5 residues within 4Å: Chain B: K.44, Y.45, S.48, L.71, G.72 Ligand excluded by PLIP EDO.12: 4 residues within 4Å: Chain C: S.129, L.162, H.163, S.164 Ligand excluded by PLIP EDO.13: 2 residues within 4Å: Chain C: H.132, R.133 Ligand excluded by PLIP EDO.14: 4 residues within 4Å: Chain C: W.36, E.85, E.88, L.89 Ligand excluded by PLIP EDO.15: 5 residues within 4Å: Chain D: G.41, F.42, Y.45, R.81 Chain E: Q.53 Ligand excluded by PLIP EDO.18: 2 residues within 4Å: Chain D: D.105, R.128 Ligand excluded by PLIP EDO.19: 5 residues within 4Å: Chain D: K.44, Y.45, S.48, L.71, G.72 Ligand excluded by PLIP EDO.20: 4 residues within 4Å: Chain D: E.64, R.79 Chain E: E.65 Ligands: EDO.21 Ligand excluded by PLIP EDO.21: 8 residues within 4Å: Chain D: Q.68, K.74, G.76, R.79 Chain E: E.65, T.69, D.70 Ligands: EDO.20 Ligand excluded by PLIP EDO.22: 5 residues within 4Å: Chain D: R.81, R.84 Chain E: Q.53, D.55, L.58 Ligand excluded by PLIP EDO.23: 7 residues within 4Å: Chain D: E.136, G.148, R.151 Chain E: Q.137, Q.138, E.141, D.142 Ligand excluded by PLIP EDO.25: 4 residues within 4Å: Chain E: S.75 Chain F: Q.52, T.69, D.70 Ligand excluded by PLIP

8 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)

BME.2: 5 residues within 4Å: Chain A: C.98, Y.119, V.122, S.123 Chain H: R.113 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.123 BME.7: 2 residues within 4Å: Chain B: C.98, Y.119 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:S.123 BME.11: 3 residues within 4Å: Chain C: C.98, Y.119, S.123 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:S.123 Water bridges: C:Y.119 BME.17: 4 residues within 4Å: Chain C: R.113 Chain D: C.98, Y.119, S.123 3 PLIP interactions: 2 interactions with chain D, 1 interactions with chain C Water bridges: D:D.57, D:D.57 Hydrogen bonds: C:R.113 BME.24: 3 residues within 4Å: Chain E: C.98, Y.119, S.123 2 PLIP interactions: 2 interactions with chain E Hydrogen bonds: E:S.123 Water bridges: E:Y.119 BME.26: 4 residues within 4Å: Chain F: C.98, Y.119, V.122, S.123 1 PLIP interactions: 1 interactions with chain F Hydrogen bonds: F:V.122 BME.27: 3 residues within 4Å: Chain G: C.98, V.122, S.123 1 PLIP interactions: 1 interactions with chain G Hydrogen bonds: G:S.123 BME.28: 4 residues within 4Å: Chain H: C.98, Y.119, V.122, S.123 1 PLIP interactions: 1 interactions with chain H Hydrogen bonds: H:S.123

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.6: 7 residues within 4Å: Chain B: T.87, R.113, Q.116, Y.117, L.147, H.150 Chain C: S.123 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:Y.117 PEG.16: 8 residues within 4Å: Chain D: A.93, N.94, Y.95, S.96, D.99, N.102, A.104, R.115 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:Y.95, D:S.96, D:R.115

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.8: 10 residues within 4Å: Chain B: P.18, R.19, P.20, P.23, W.28, E.32, T.35, W.36, Q.39, L.89 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:W.36 Water bridges: B:L.22, B:L.89

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sporny, M. et al., Structural Evidence for an Octameric Ring Arrangement of SARM1. J.Mol.Biol. (2019)

Release Date

2019-07-03

Peptides

Sterile alpha and TIR motif-containing protein 1: ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

Sterile alpha and TIR motif-containing protein 1

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