SMTL ID : 6qxj.1

Structure of MBP-Mcl-1 in complex with compound 6a

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x GLC- GLC: alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose(Non-covalent)

GLC-GLC.1: 16 residues within 4Å: Chain A: N.13, D.15, K.16, W.63, A.64, D.66, R.67, E.112, E.154, P.155, Y.156, F.157, W.231, M.331, W.341, R.345 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:W.63, A:R.67, A:R.67, A:E.154, A:Y.156, A:R.345 Water bridges: A:E.45

1 x JKQ: (2~{R})-2-[[6-ethyl-5-(1~{H}-indol-5-yl)thieno[2,3-d]pyrimidin-4-yl]amino]propanoic acid(Non-covalent)

JKQ.2: 12 residues within 4Å: Chain A: H.421, A.424, F.425, M.428, V.446, M.447, V.450, F.451, R.460, T.463, L.464, F.467 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:F.425, A:F.425, A:M.428, A:V.446, A:V.450, A:V.450, A:F.467 Hydrogen bonds: A:A.424, A:R.460 Salt bridges: A:R.460

1 x NA: SODIUM ION(Non-functional Binders)

NA.3: 0 residues within 4Å: (No contacts) 4 PLIP interactions: 4 interactions with chain A Water bridges: A:N.13, A:L.44, A:E.45, A:E.45

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Szlavik, Z. et al., Structure-Guided Discovery of a Selective Mcl-1 Inhibitor with Cellular Activity. J.Med.Chem. (2019)

Release Date

2019-08-07

Peptides

Maltose-binding periplasmic protein,Induced myeloid leukemia cell differentiation protein Mcl-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Maltose-binding periplasmic protein,Induced myeloid leukemia cell differentiation protein Mcl-1

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