- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.43 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x G6P: 6-O-phosphono-alpha-D-glucopyranose(Non-covalent)
- 4 x MG: MAGNESIUM ION(Non-covalent)
MG.2: 4 residues within 4Å:- Chain A: K.221, E.223, D.250
- Ligands: MLI.4
3 PLIP interactions:2 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:E.223, A:D.250, H2O.2
MG.6: 3 residues within 4Å:- Chain B: E.223, D.250
- Ligands: MLI.8
2 PLIP interactions:2 interactions with chain B- Metal complexes: B:E.223, B:D.250
MG.10: 4 residues within 4Å:- Chain C: K.73, E.223, D.250
- Ligands: MLI.11
2 PLIP interactions:2 interactions with chain C- Metal complexes: C:E.223, C:D.250
MG.13: 3 residues within 4Å:- Chain D: E.223, D.250
- Ligands: MLI.14
2 PLIP interactions:2 interactions with chain D- Metal complexes: D:E.223, D:D.250
- 2 x GOL: GLYCEROL(Non-functional Binders)
GOL.3: 6 residues within 4Å:- Chain A: W.217, S.241, D.242, K.276, F.388, L.391
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:S.241, A:D.242, A:K.276
GOL.7: 7 residues within 4Å:- Chain B: W.217, S.241, D.242, N.275, K.276, F.388, L.391
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:D.242, B:K.276
- 4 x MLI: MALONATE ION(Non-functional Binders)
MLI.4: 9 residues within 4Å:- Chain A: R.34, K.221, E.223, A.247, R.248, G.249, D.250, T.282
- Ligands: MG.2
11 PLIP interactions:11 interactions with chain A- Hydrophobic interactions: A:A.247
- Hydrogen bonds: A:G.249, A:D.250, A:D.250, A:T.282, A:T.282
- Water bridges: A:S.194, A:T.282, A:S.316
- Salt bridges: A:R.34, A:K.221
MLI.8: 9 residues within 4Å:- Chain B: R.34, K.221, E.223, A.247, R.248, G.249, D.250, T.282
- Ligands: MG.6
10 PLIP interactions:10 interactions with chain B- Hydrophobic interactions: B:A.247
- Hydrogen bonds: B:E.223, B:G.249, B:D.250
- Water bridges: B:R.34, B:R.34, B:R.34, B:S.194
- Salt bridges: B:R.34, B:K.221
MLI.11: 10 residues within 4Å:- Chain C: R.34, K.221, E.223, A.247, R.248, G.249, D.250, T.282, M.314
- Ligands: MG.10
5 PLIP interactions:5 interactions with chain C- Hydrophobic interactions: C:A.247
- Hydrogen bonds: C:G.249, C:D.250
- Salt bridges: C:R.34, C:K.221
MLI.14: 9 residues within 4Å:- Chain D: R.34, K.221, E.223, A.247, R.248, G.249, D.250, T.282
- Ligands: MG.13
10 PLIP interactions:10 interactions with chain D- Hydrophobic interactions: D:A.247
- Hydrogen bonds: D:G.249, D:D.250, D:T.282, D:T.282
- Water bridges: D:R.34, D:S.194, D:S.316
- Salt bridges: D:R.34, D:K.221
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Abdelhamid, Y. et al., Evolutionary plasticity in the allosteric regulator-binding site of pyruvate kinase isoform PykA fromPseudomonas aeruginosa. J.Biol.Chem. (2019)
- Release Date
- 2019-09-11
- Peptides
- Pyruvate kinase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
DC
FD
J
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.43 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x G6P: 6-O-phosphono-alpha-D-glucopyranose(Non-covalent)
- 4 x MG: MAGNESIUM ION(Non-covalent)
- 2 x GOL: GLYCEROL(Non-functional Binders)
- 4 x MLI: MALONATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Abdelhamid, Y. et al., Evolutionary plasticity in the allosteric regulator-binding site of pyruvate kinase isoform PykA fromPseudomonas aeruginosa. J.Biol.Chem. (2019)
- Release Date
- 2019-09-11
- Peptides
- Pyruvate kinase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
DC
FD
J