SMTL ID : 6qyy.1 (1 other biounit)

The crystal structure of head fiber gp8.5 N base in bacteriophage phi29

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-trimer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 10 residues within 4Å: Chain A: L.19, I.30, V.42, A.43, V.44, K.45, V.47, T.53, Q.54, V.55 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:V.44, A:K.45, A:T.53, A:T.53 Water bridges: A:V.42, A:N.56 Salt bridges: A:K.45 SO4.2: 7 residues within 4Å: Chain B: V.42, V.44, L.60, W.63, Q.64 Chain C: M.1, V.3 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Q.64 Water bridges: B:Q.64, B:Q.64 SO4.3: 3 residues within 4Å: Chain B: K.45, T.53, Q.54 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:T.53, B:Q.54 Salt bridges: B:K.45 SO4.4: 5 residues within 4Å: Chain A: M.1 Chain C: V.42, L.60, W.63, Q.64 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:Q.64, C:Q.64 Water bridges: C:Y.41, C:Y.41

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xu, J. et al., Structural assembly of the tailed bacteriophage φ29. Nat Commun (2019)

Release Date

2019-06-12

Peptides

Capsid fiber protein: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

C
E

Capsid fiber protein

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