SMTL ID : 6qzh.1

Structure of the human CC Chemokine Receptor 7 in complex with the intracellular allosteric antagonist Cmp2105 and the insertion protein Sialidase NanA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.1: 4 residues within 4Å: Chain A: D.306, I.331, Y.479, L.487 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.479

1 x JLW: 3-[[4-[[(1~{R})-2,2-dimethyl-1-(5-methylfuran-2-yl)propyl]amino]-1,1-bis(oxidanylidene)-1,2,5-thiadiazol-3-yl]amino]-~{N},~{N},6-trimethyl-2-oxidanyl-benzamide(Non-covalent)

JLW.2: 16 residues within 4Å: Chain A: V.38, T.41, Y.42, F.45, T.50, T.52, D.53, L.56, R.113, I.690, Y.754, G.758, V.759, K.760, F.761, D.764 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:Y.42, A:F.45, A:D.53, A:L.56, A:L.56, A:I.690, A:Y.754 Hydrogen bonds: A:T.50, A:D.53, A:D.53, A:V.759, A:K.760, A:F.761

1 x NA: SODIUM ION(Non-functional Binders)

NA.3: 4 residues within 4Å: Chain A: N.35, A.60, D.63, N.750 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.35, A:D.63

2 x TAR: D(-)-TARTARIC ACID(Non-covalent)

TAR.4: 4 residues within 4Å: Chain A: D.230, R.270, D.281, R.282 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.270, A:R.270, A:R.282 Salt bridges: A:R.270, A:R.282 TAR.5: 4 residues within 4Å: Chain A: K.630, H.631, S.681, K.682 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:K.630, A:H.631, A:S.681, A:K.682, A:K.682 Salt bridges: A:K.630, A:K.630, A:H.631, A:K.682

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jaeger, K. et al., Structural Basis for Allosteric Ligand Recognition in the Human CC Chemokine Receptor 7. Cell (2019)

Release Date

2019-09-04

Peptides

C-C chemokine receptor type 7,Sialidase A,C-C chemokine receptor type 7: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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C-C chemokine receptor type 7,Sialidase A,C-C chemokine receptor type 7