SMTL ID : 6qzi.1

Crystal structure of human Aquaporin 7 at 1.9 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-tetramer

Ligands

56 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 5 residues within 4Å: Chain A: V.50, G.54, G.58, T.158 Chain C: N.163 Ligand excluded by PLIP GOL.2: 8 residues within 4Å: Chain A: F.42, G.190, Y.191, A.192, I.193, R.197 Ligands: GOL.8, GOL.12 Ligand excluded by PLIP GOL.3: 6 residues within 4Å: Chain A: L.28, N.29, A.105, H.108 Chain C: H.133, M.187 Ligand excluded by PLIP GOL.4: 4 residues within 4Å: Chain A: C.70, A.71, G.73, W.77 Ligand excluded by PLIP GOL.5: 6 residues within 4Å: Chain A: R.3, I.56 Chain C: E.161, N.162, I.244, T.247 Ligand excluded by PLIP GOL.6: 5 residues within 4Å: Chain A: G.124, A.127, T.128, Y.129 Ligands: GOL.8 Ligand excluded by PLIP GOL.7: 6 residues within 4Å: Chain A: M.26, V.27, L.28, N.29, K.30, F.109 Ligand excluded by PLIP GOL.8: 10 residues within 4Å: Chain A: V.23, M.26, Y.35, V.38, T.128, G.190, Y.191, R.197 Ligands: GOL.2, GOL.6 Ligand excluded by PLIP GOL.9: 8 residues within 4Å: Chain A: K.30, K.31, Y.32, G.33, S.34 Chain C: S.34, Y.35, L.36 Ligand excluded by PLIP GOL.10: 4 residues within 4Å: Chain A: Y.99, S.100, Y.103 Chain C: R.138 Ligand excluded by PLIP GOL.11: 6 residues within 4Å: Chain A: R.74, F.155, T.158, D.159, Y.240, L.241 Ligand excluded by PLIP GOL.12: 7 residues within 4Å: Chain A: V.46, H.60, N.62, V.178, N.194 Ligands: GOL.2, GOL.13 Ligand excluded by PLIP GOL.13: 9 residues within 4Å: Chain A: V.46, A.59, H.60, M.61, N.62, L.150, L.154, N.194 Ligands: GOL.12 Ligand excluded by PLIP GOL.14: 3 residues within 4Å: Chain A: T.104, H.108 Chain C: H.133 Ligand excluded by PLIP GOL.18: 5 residues within 4Å: Chain B: V.50, G.54, G.58, T.158 Chain D: N.163 Ligand excluded by PLIP GOL.19: 8 residues within 4Å: Chain B: F.42, G.190, Y.191, A.192, I.193, R.197 Ligands: GOL.25, GOL.29 Ligand excluded by PLIP GOL.20: 6 residues within 4Å: Chain B: L.28, N.29, A.105, H.108 Chain D: H.133, M.187 Ligand excluded by PLIP GOL.21: 4 residues within 4Å: Chain B: C.70, A.71, G.73, W.77 Ligand excluded by PLIP GOL.22: 6 residues within 4Å: Chain B: R.3, I.56 Chain D: E.161, N.162, I.244, T.247 Ligand excluded by PLIP GOL.23: 5 residues within 4Å: Chain B: G.124, A.127, T.128, Y.129 Ligands: GOL.25 Ligand excluded by PLIP GOL.24: 6 residues within 4Å: Chain B: M.26, V.27, L.28, N.29, K.30, F.109 Ligand excluded by PLIP GOL.25: 10 residues within 4Å: Chain B: V.23, M.26, Y.35, V.38, T.128, G.190, Y.191, R.197 Ligands: GOL.19, GOL.23 Ligand excluded by PLIP GOL.26: 8 residues within 4Å: Chain B: K.30, K.31, Y.32, G.33, S.34 Chain D: S.34, Y.35, L.36 Ligand excluded by PLIP GOL.27: 4 residues within 4Å: Chain B: Y.99, S.100, Y.103 Chain D: R.138 Ligand excluded by PLIP GOL.28: 6 residues within 4Å: Chain B: R.74, F.155, T.158, D.159, Y.240, L.241 Ligand excluded by PLIP GOL.29: 7 residues within 4Å: Chain B: V.46, H.60, N.62, V.178, N.194 Ligands: GOL.19, GOL.30 Ligand excluded by PLIP GOL.30: 9 residues within 4Å: Chain B: V.46, A.59, H.60, M.61, N.62, L.150, L.154, N.194 Ligands: GOL.29 Ligand excluded by PLIP GOL.31: 3 residues within 4Å: Chain B: T.104, H.108 Chain D: H.133 Ligand excluded by PLIP GOL.35: 5 residues within 4Å: Chain B: N.163 Chain C: V.50, G.54, G.58, T.158 Ligand excluded by PLIP GOL.36: 8 residues within 4Å: Chain C: F.42, G.190, Y.191, A.192, I.193, R.197 Ligands: GOL.42, GOL.46 Ligand excluded by PLIP GOL.37: 6 residues within 4Å: Chain B: H.133, M.187 Chain C: L.28, N.29, A.105, H.108 Ligand excluded by PLIP GOL.38: 4 residues within 4Å: Chain C: C.70, A.71, G.73, W.77 Ligand excluded by PLIP GOL.39: 6 residues within 4Å: Chain B: E.161, N.162, I.244, T.247 Chain C: R.3, I.56 Ligand excluded by PLIP GOL.40: 5 residues within 4Å: Chain C: G.124, A.127, T.128, Y.129 Ligands: GOL.42 Ligand excluded by PLIP GOL.41: 6 residues within 4Å: Chain C: M.26, V.27, L.28, N.29, K.30, F.109 Ligand excluded by PLIP GOL.42: 10 residues within 4Å: Chain C: V.23, M.26, Y.35, V.38, T.128, G.190, Y.191, R.197 Ligands: GOL.36, GOL.40 Ligand excluded by PLIP GOL.43: 8 residues within 4Å: Chain B: S.34, Y.35, L.36 Chain C: K.30, K.31, Y.32, G.33, S.34 Ligand excluded by PLIP GOL.44: 4 residues within 4Å: Chain B: R.138 Chain C: Y.99, S.100, Y.103 Ligand excluded by PLIP GOL.45: 6 residues within 4Å: Chain C: R.74, F.155, T.158, D.159, Y.240, L.241 Ligand excluded by PLIP GOL.46: 7 residues within 4Å: Chain C: V.46, H.60, N.62, V.178, N.194 Ligands: GOL.36, GOL.47 Ligand excluded by PLIP GOL.47: 9 residues within 4Å: Chain C: V.46, A.59, H.60, M.61, N.62, L.150, L.154, N.194 Ligands: GOL.46 Ligand excluded by PLIP GOL.48: 3 residues within 4Å: Chain B: H.133 Chain C: T.104, H.108 Ligand excluded by PLIP GOL.52: 5 residues within 4Å: Chain A: N.163 Chain D: V.50, G.54, G.58, T.158 Ligand excluded by PLIP GOL.53: 8 residues within 4Å: Chain D: F.42, G.190, Y.191, A.192, I.193, R.197 Ligands: GOL.59, GOL.63 Ligand excluded by PLIP GOL.54: 6 residues within 4Å: Chain A: H.133, M.187 Chain D: L.28, N.29, A.105, H.108 Ligand excluded by PLIP GOL.55: 4 residues within 4Å: Chain D: C.70, A.71, G.73, W.77 Ligand excluded by PLIP GOL.56: 6 residues within 4Å: Chain A: E.161, N.162, I.244, T.247 Chain D: R.3, I.56 Ligand excluded by PLIP GOL.57: 5 residues within 4Å: Chain D: G.124, A.127, T.128, Y.129 Ligands: GOL.59 Ligand excluded by PLIP GOL.58: 6 residues within 4Å: Chain D: M.26, V.27, L.28, N.29, K.30, F.109 Ligand excluded by PLIP GOL.59: 10 residues within 4Å: Chain D: V.23, M.26, Y.35, V.38, T.128, G.190, Y.191, R.197 Ligands: GOL.53, GOL.57 Ligand excluded by PLIP GOL.60: 8 residues within 4Å: Chain A: S.34, Y.35, L.36 Chain D: K.30, K.31, Y.32, G.33, S.34 Ligand excluded by PLIP GOL.61: 4 residues within 4Å: Chain A: R.138 Chain D: Y.99, S.100, Y.103 Ligand excluded by PLIP GOL.62: 6 residues within 4Å: Chain D: R.74, F.155, T.158, D.159, Y.240, L.241 Ligand excluded by PLIP GOL.63: 7 residues within 4Å: Chain D: V.46, H.60, N.62, V.178, N.194 Ligands: GOL.53, GOL.64 Ligand excluded by PLIP GOL.64: 9 residues within 4Å: Chain D: V.46, A.59, H.60, M.61, N.62, L.150, L.154, N.194 Ligands: GOL.63 Ligand excluded by PLIP GOL.65: 3 residues within 4Å: Chain A: H.133 Chain D: T.104, H.108 Ligand excluded by PLIP

12 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.15: 5 residues within 4Å: Chain A: L.114, G.209, W.210, G.211, Q.213 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:W.210, A:Q.213, A:Q.213 PO4.16: 4 residues within 4Å: Chain A: P.167, G.168 Chain C: P.164, L.166 1 PLIP interactions: 1 interactions with chain A Water bridges: A:G.168 PO4.17: 4 residues within 4Å: Chain A: F.215, S.216, N.220, W.222 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.220, A:N.220 PO4.32: 5 residues within 4Å: Chain B: L.114, G.209, W.210, G.211, Q.213 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:W.210, B:Q.213, B:Q.213 PO4.33: 4 residues within 4Å: Chain B: P.167, G.168 Chain D: P.164, L.166 1 PLIP interactions: 1 interactions with chain B Water bridges: B:G.168 PO4.34: 4 residues within 4Å: Chain B: F.215, S.216, N.220, W.222 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.220, B:N.220 PO4.49: 5 residues within 4Å: Chain C: L.114, G.209, W.210, G.211, Q.213 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:W.210, C:Q.213, C:Q.213 PO4.50: 4 residues within 4Å: Chain B: P.164, L.166 Chain C: P.167, G.168 1 PLIP interactions: 1 interactions with chain C Water bridges: C:G.168 PO4.51: 4 residues within 4Å: Chain C: F.215, S.216, N.220, W.222 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:N.220, C:N.220 PO4.66: 5 residues within 4Å: Chain D: L.114, G.209, W.210, G.211, Q.213 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:W.210, D:Q.213, D:Q.213 PO4.67: 4 residues within 4Å: Chain A: P.164, L.166 Chain D: P.167, G.168 1 PLIP interactions: 1 interactions with chain D Water bridges: D:G.168 PO4.68: 4 residues within 4Å: Chain D: F.215, S.216, N.220, W.222 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:N.220, D:N.220

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

de Mare, S.W. et al., Structural Basis for Glycerol Efflux and Selectivity of Human Aquaporin 7. Structure (2020)

Release Date

2019-11-27

Peptides

Aquaporin-7: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Membrane

We predict this structure to be a membrane protein.
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Aquaporin-7

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