SMTL ID : 6qzk.1

Structure of Clostridium butyricum Argonaute bound to a guide DNA (5' deoxycytidine) and a 19-mer target DNA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.55 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 6 residues within 4Å: Chain A: N.515, K.519, F.747, L.748 Chain B: C.1, A.3 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:L.748

5 x FMT: FORMIC ACID(Non-functional Binders)

FMT.2: 3 residues within 4Å: Chain A: L.64, D.65, Y.102 No protein-ligand interaction detected (PLIP) FMT.3: 1 residues within 4Å: Chain A: K.627 No protein-ligand interaction detected (PLIP) FMT.4: 2 residues within 4Å: Chain B: G.11 Ligands: FMT.5 No protein-ligand interaction detected (PLIP) FMT.5: 2 residues within 4Å: Chain B: A.10 Ligands: FMT.4 No protein-ligand interaction detected (PLIP) FMT.6: 1 residues within 4Å: Chain B: G.4 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hegge, J.W. et al., DNA-guided DNA cleavage at moderate temperatures by Clostridium butyricum Argonaute. Nucleic Acids Res. (2019)

Release Date

2019-04-24

Peptides

Clostridium butyricum Argonaute: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Clostridium butyricum Argonaute