SMTL ID : 6qzo.3 (3 other biounits)

Crystal structure of DyP-type peroxidase from Cellulomonas bogoriensis

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-dimer

Ligands

2 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 27 residues within 4Å: Chain A: N.195, M.197, Q.199, V.200, E.201, G.202, T.203, A.204, I.236, M.238, I.255, R.257, H.292, I.293, A.296, R.297, P.298, F.305, R.307, L.326, F.328, F.339, V.342, Q.343, L.346, L.352, T.356 22 PLIP interactions: 22 interactions with chain A, Hydrophobic interactions: A:Q.199, A:I.236, A:I.236, A:I.293, A:A.296, A:F.305, A:L.326, A:L.326, A:F.328, A:F.328, A:F.339, A:V.342, A:L.346, A:L.352, A:T.356 Hydrogen bonds: A:G.202, A:T.203, A:A.204 Salt bridges: A:R.307 pi-Stacking: A:H.292 pi-Cation interactions: A:R.307 Metal complexes: A:H.292 HEM.2: 25 residues within 4Å: Chain B: N.195, Q.199, V.200, E.201, G.202, T.203, A.204, I.236, M.238, I.255, R.257, H.292, I.293, A.296, R.297, P.298, F.305, R.307, L.326, F.328, V.342, Q.343, L.346, L.352, T.356 21 PLIP interactions: 21 interactions with chain B, Hydrophobic interactions: B:Q.199, B:I.236, B:I.236, B:I.255, B:I.293, B:A.296, B:F.305, B:L.326, B:L.326, B:F.328, B:V.342, B:L.346, B:L.352, B:T.356 Hydrogen bonds: B:G.202, B:T.203, B:A.204 Salt bridges: B:R.307 pi-Stacking: B:F.328 pi-Cation interactions: B:R.307 Metal complexes: B:H.292

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Habib, M.H. et al., Characterization of a New DyP-Peroxidase from the Alkaliphilic Cellulomonad, Cellulomonas bogoriensis. Molecules (2019)

Release Date

2019-04-03

Peptides

Peroxidase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
F

Peroxidase

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