SMTL ID : 6qzw.1 (1 other biounit)

DPP8 bound to a dipeptide (MP) from the N-terminus of BRCA2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

homo-dimer

Ligands

2 x MET- PRO: MET-PRO(Non-covalent)

MET-PRO.1: 14 residues within 4Å: Chain A: R.160, E.275, E.276, Y.669, Q.673, V.674, S.755, Y.756, V.781, Y.787, Y.791, N.835, V.836, H.865 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:V.781, A:Y.787, A:Y.791, A:Y.791, A:V.836 Hydrogen bonds: A:R.160, A:E.275, A:E.276, A:Y.669, A:S.755, A:Y.756, A:Y.787, A:N.835 Salt bridges: A:H.865 MET-PRO.2: 12 residues within 4Å: Chain B: R.160, E.275, E.276, Y.669, Q.673, V.674, S.755, Y.756, Y.787, Y.791, N.835, H.865 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:Y.791, B:Y.791 Hydrogen bonds: B:R.160, B:E.275, B:S.755, B:Y.756, B:Y.787, B:N.835 Salt bridges: B:H.865

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Silva-Garcia, M. et al., Dipeptidyl peptidase 9 triggers BRCA2 degradation by the N-degron pathway to promote DNA-damage repair. Biorxiv (2020)

Release Date

2020-09-30

Peptides

Dipeptidyl peptidase 8: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Dipeptidyl peptidase 8

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