SMTL ID : 6r1b.4 (3 other biounits)

Crystal structure of UgpB from Mycobacterium tuberculosis in complex with glycerophosphocholine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.27 Å

Oligo State

monomer

Ligands

1 x CH5: 2-(((R)-2,3-DIHYDROXYPROPYL)PHOSPHORYLOXY)-N,N,N-TRIMETHYLETHANAMINIUM(Non-covalent)

CH5.1: 12 residues within 4Å: Chain A: Y.44, D.68, R.69, S.119, L.171, W.174, S.238, S.241, G.271, G.272, Y.311, R.339 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:Y.44, A:R.69, A:S.119, A:W.174, A:S.238, A:G.272, A:Y.311, A:R.339, A:R.339

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: S.2, D.6, D.59 6 PLIP interactions: 1 interactions with chain A, 5 Ligand-Water interactions Metal complexes: A:D.6, H2O.1, H2O.1, H2O.1, H2O.1, H2O.2

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fenn, J.S. et al., Structural Basis of Glycerophosphodiester Recognition by theMycobacterium tuberculosisSubstrate-Binding Protein UgpB. Acs Chem.Biol. (2019)

Release Date

2019-09-04

Peptides

Putative Sn-glycerol-3-phosphate-binding lipoprotein UgpB: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

Putative Sn-glycerol-3-phosphate-binding lipoprotein UgpB