SMTL ID : 6r1l.1

Crystal structure of LmrR with bound copper phenanthroline

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

2 x PHN: 1,10-PHENANTHROLINE(Non-covalent)

PHN.1: 7 residues within 4Å: Chain A: V.15, W.96 Chain B: V.15, W.96 Ligands: CU.2, PHN.3, CU.4 9 PLIP interactions: 5 interactions with chain A, 4 interactions with chain B Hydrophobic interactions: A:V.15, A:W.96, B:V.15, B:W.96 pi-Stacking: A:W.96, A:W.96, A:W.96, B:W.96, B:W.96 PHN.3: 7 residues within 4Å: Chain A: V.15, W.96 Chain B: V.15, W.96 Ligands: PHN.1, CU.2, CU.4 9 PLIP interactions: 4 interactions with chain A, 5 interactions with chain B Hydrophobic interactions: A:V.15, A:W.96, B:V.15, B:W.96 pi-Stacking: A:W.96, A:W.96, B:W.96, B:W.96, B:W.96

2 x CU: COPPER (II) ION(Non-covalent)

CU.2: 4 residues within 4Å: Chain A: W.96 Ligands: PHN.1, PHN.3, CU.4 No protein-ligand interaction detected (PLIP) CU.4: 4 residues within 4Å: Chain B: W.96 Ligands: PHN.1, CU.2, PHN.3 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Villarino, L. et al., Cofactor Binding Dynamics Influence the Catalytic Activity and Selectivity of an Artificial Metalloenzyme. Acs Catalysis (2020)

Release Date

2020-04-01

Peptides

Transcriptional regulator, PadR-like family: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Transcriptional regulator, PadR-like family

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