SMTL ID : 6r38.1

T. brucei FPPS in complex with 2-(2,5-dichlorobenzo[b]thiophen-3-yl)acetic acid

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.33 Å

Oligo State

homo-dimer

Ligands

2 x JQE: 2-[2,5-bis(chloranyl)-1-benzothiophen-3-yl]ethanoic acid(Non-covalent)

JQE.1: 8 residues within 4Å: Chain A: N.51, R.52, T.219, Y.220, F.253, L.360, K.363, T.364 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:T.219, A:Y.220, A:F.253, A:F.253, A:L.360, A:K.363 Salt bridges: A:R.52 Halogen bonds: A:T.219 JQE.3: 8 residues within 4Å: Chain B: N.51, R.52, T.219, Y.220, F.253, L.360, K.363, T.364 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:T.219, B:Y.220, B:F.253, B:F.253, B:L.360, B:K.363 Salt bridges: B:R.52 Halogen bonds: B:T.219

2 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.2: 7 residues within 4Å: Chain A: D.177, I.210, K.214, Q.254, D.258, K.280, C.281 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.214 Salt bridges: A:D.177, A:D.258 DMS.4: 7 residues within 4Å: Chain B: D.177, I.210, K.214, Q.254, D.258, K.280, C.281 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:K.214 Salt bridges: B:D.177, B:D.258

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Muenzker, L. et al., Targeting Trypanosoma brucei FPPS by Fragment-based drug discovery. Thesis (2019)

Release Date

2020-04-08

Peptides

Farnesyl pyrophosphate synthase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Farnesyl pyrophosphate synthase

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