SMTL ID : 6r3e.1 (1 other biounit)

Human DNMT3B PWWP domain in complex with triisopropanolamine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.27 Å

Oligo State

monomer

Ligands

1 x 96H: Triisopropanolamine(Non-covalent)

96H.1: 5 residues within 4Å: Chain A: I.19, F.22, W.25, W.49, D.52 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:F.22, A:W.25, A:W.25, A:W.49 Water bridges: A:G.17, A:S.23, A:D.52, A:D.52, A:K.54

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: R.98, P.136, N.137 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.137 Salt bridges: A:R.98 SO4.3: 2 residues within 4Å: Chain A: K.37, R.38 4 PLIP interactions: 4 interactions with chain A Water bridges: A:R.38, A:R.38 Salt bridges: A:K.37, A:R.38 SO4.4: 2 residues within 4Å: Chain A: K.20, K.62 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:K.20, A:K.62

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rondelet, G. et al., Targeting PWWP domain of DNMT3B for epigenetic cancer therapy: identification and structural characterization of potential protein-protein interaction inhibitors. To be published

Release Date

2020-04-08

Peptides

DNA (cytosine-5)-methyltransferase 3B,DNA (cytosine-5)-methyltransferase 3B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DNA (cytosine-5)-methyltransferase 3B,DNA (cytosine-5)-methyltransferase 3B

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