SMTL ID : 6r3p.1 (1 other biounit)

Crystal structure of human DMC1 ATPase domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

homo-octamer

Ligands

8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 4 residues within 4Å: Chain A: K.176 Chain B: Y.115, T.116, H.119 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:K.176, B:T.116 EDO.2: 9 residues within 4Å: Chain A: L.7, Y.12, K.15, M.40, E.179 Chain B: Y.111, A.112, R.113, Y.115 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:K.15, B:R.113 Water bridges: A:E.179 EDO.3: 4 residues within 4Å: Chain C: K.176 Chain D: Y.115, T.116, H.119 2 PLIP interactions: 1 interactions with chain C, 1 interactions with chain D Hydrogen bonds: C:K.176, D:T.116 EDO.4: 9 residues within 4Å: Chain C: L.7, Y.12, K.15, M.40, E.179 Chain D: Y.111, A.112, R.113, Y.115 3 PLIP interactions: 2 interactions with chain C, 1 interactions with chain D Hydrogen bonds: C:K.15, D:R.113 Water bridges: C:E.179 EDO.5: 4 residues within 4Å: Chain E: K.176 Chain F: Y.115, T.116, H.119 2 PLIP interactions: 1 interactions with chain F, 1 interactions with chain E Hydrogen bonds: F:T.116, E:K.176 EDO.6: 9 residues within 4Å: Chain E: L.7, Y.12, K.15, M.40, E.179 Chain F: Y.111, A.112, R.113, Y.115 3 PLIP interactions: 1 interactions with chain F, 2 interactions with chain E Hydrogen bonds: F:R.113, E:K.15 Water bridges: E:E.179 EDO.7: 4 residues within 4Å: Chain G: K.176 Chain H: Y.115, T.116, H.119 2 PLIP interactions: 1 interactions with chain G, 1 interactions with chain H Hydrogen bonds: G:K.176, H:T.116 EDO.8: 9 residues within 4Å: Chain G: L.7, Y.12, K.15, M.40, E.179 Chain H: Y.111, A.112, R.113, Y.115 3 PLIP interactions: 2 interactions with chain G, 1 interactions with chain H Hydrogen bonds: G:K.15, H:R.113 Water bridges: G:E.179

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dunce, J.M. et al., Crystal structure of human DMC1 ATPase domain. To Be Published

Release Date

2019-04-03

Peptides

Meiotic recombination protein DMC1/LIM15 homolog: ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

E
A

F
B

G
A

H
B

Meiotic recombination protein DMC1/LIM15 homolog

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