SMTL ID : 6r3y.1

M.tuberculosis nitrobindin with a cyanide molecule coordinated to the heme iron atom

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 18 residues within 4Å: Chain A: T.29, I.30, F.33, Y.35, Q.53, T.55, H.65, E.67, H.85, K.123, V.125, L.128, Y.141, M.145, V.148, H.155, L.156 Ligands: CYN.2 21 PLIP interactions: 21 interactions with chain A, Hydrophobic interactions: A:I.30, A:I.30, A:F.33, A:F.33, A:F.33, A:F.33, A:Y.35, A:Y.35, A:T.55, A:H.65, A:K.123, A:V.125, A:L.128, A:L.156, A:L.156 Hydrogen bonds: A:T.29, A:T.29 Salt bridges: A:K.123, A:K.123 pi-Stacking: A:H.155 Metal complexes: A:H.155

1 x CYN: CYANIDE ION(Non-functional Binders)

CYN.2: 1 residues within 4Å: Ligands: HEM.1 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

De Simone, G. et al., Mycobacterial and Human Nitrobindins: Structure and Function. Antioxid.Redox Signal. (2020)

Release Date

2020-04-08

Peptides

UPF0678 fatty acid-binding protein-like protein ERS007657_00996: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

UPF0678 fatty acid-binding protein-like protein ERS007657_00996

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