SMTL ID : 6r3z.1

Structure of the SBP FpvC in complex with Ni2+ ion from P. aeruginosa in P212121 space group

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

monomer

Ligands

1 x NI: NICKEL (II) ION(Non-covalent)

NI.1: 6 residues within 4Å: Chain A: H.41, H.66, H.111, H.177, H.199, H.250 6 PLIP interactions: 6 interactions with chain A Metal complexes: A:H.41, A:H.66, A:H.111, A:H.177, A:H.199, A:H.250

7 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 4 residues within 4Å: Chain A: V.84, I.85, E.129, L.133 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.129 Water bridges: A:V.84 EDO.3: 5 residues within 4Å: Chain A: E.202, P.203, S.204, P.205, Y.233 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.202, A:S.204 EDO.4: 3 residues within 4Å: Chain A: A.154, A.157, D.158 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.158 EDO.5: 2 residues within 4Å: Chain A: P.32, Y.256 1 PLIP interactions: 1 interactions with chain A Water bridges: A:Y.256 EDO.6: 4 residues within 4Å: Chain A: H.41, H.199, G.200, I.201 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.199 EDO.7: 4 residues within 4Å: Chain A: D.158, A.159, R.162, D.270 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.158 Water bridges: A:A.159 EDO.8: 2 residues within 4Å: Chain A: D.158, R.162 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.158, A:R.162, A:R.162

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vigouroux, A. et al., A unique ferrous iron binding mode is associated with large conformational changes for the transport protein FpvC of Pseudomonas aeruginosa. Febs J. (2020)

Release Date

2019-07-31

Peptides

Probable adhesion protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Probable adhesion protein

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