SMTL ID : 6r48.1 (1 other biounit)

Crystal structure of LPOR (Synechocystis) complexed with NADPH at 1.87A resolution.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.87 Å

Oligo State

monomer

Ligands

1 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NDP.1: 29 residues within 4Å: Chain A: G.9, A.10, S.11, S.12, G.13, V.14, R.34, K.38, L.58, D.59, L.60, G.61, N.86, A.87, A.88, V.89, T.110, L.139, G.140, Y.189, K.193, Y.219, G.221, C.222, V.223, T.226, P.227, L.228, F.229 31 PLIP interactions: 31 interactions with chain A Hydrophobic interactions: A:Y.219 Hydrogen bonds: A:G.9, A:S.11, A:S.11, A:S.12, A:S.12, A:V.14, A:R.34, A:D.59, A:L.60, A:G.61, A:N.86, A:A.88, A:K.193, A:V.223, A:V.223, A:T.226 Water bridges: A:G.9, A:S.12, A:G.15, A:R.34, A:R.34, A:R.34, A:K.38, A:N.86, A:L.139, A:Y.189, A:T.226 Salt bridges: A:R.34, A:K.38 pi-Cation interactions: A:R.34

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 3 residues within 4Å: Chain A: M.1, K.2, R.78 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, S. et al., Structural basis for enzymatic photocatalysis in chlorophyll biosynthesis. Nature (2019)

Release Date

2019-10-30

Peptides

Light-dependent protochlorophyllide reductase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Light-dependent protochlorophyllide reductase

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