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SMTL ID : 6r5t.1
The crystal structure of Glycoside Hydrolase BglX inactive mutant D286N from P. aeruginosa in complex with lactose
Coordinates
PDB Format
Compare
Method
X-RAY DIFFRACTION 1.60 Å
Oligo State
homo-dimer
Ligands
2 x
BGC
-
GAL
:
beta-D-galactopyranose-(1-4)-beta-D-glucopyranose
(Non-covalent)
BGC-GAL.1:
15 residues within 4Å:
Chain A:
F.50
,
N.51
,
D.79
,
F.123
,
R.137
,
K.176
,
H.177
,
M.220
,
L.223
,
N.255
,
H.256
,
M.287
,
W.398
,
E.486
Chain B:
Y.595
4
PLIP interactions
:
3 interactions with chain A
,
1 interactions with chain B
Hydrogen bonds:
A:D.79
,
A:D.79
,
A:R.137
,
A:E.486
,
A:N.51
,
A:N.51
Water bridges:
A:N.255
,
A:N.255
,
B:R.585
,
A:D.79
,
B:R.585
Salt bridges:
A:R.137
,
A:K.176
,
A:H.177
BGC-GAL.2:
15 residues within 4Å:
Chain A:
Y.595
Chain B:
F.50
,
N.51
,
D.79
,
F.123
,
R.137
,
K.176
,
H.177
,
M.220
,
L.223
,
N.255
,
H.256
,
M.287
,
W.398
,
E.486
6
PLIP interactions
:
4 interactions with chain B
,
2 interactions with chain A
Hydrogen bonds:
B:D.79
,
B:D.79
,
B:R.137
,
B:E.486
,
B:N.51
,
B:N.51
Water bridges:
B:N.255
,
B:N.255
,
A:R.585
,
A:R.585
,
A:R.585
,
B:D.79
,
B:D.79
Salt bridges:
B:R.137
,
B:K.176
,
B:H.177
4 x
PEG
:
DI(HYDROXYETHYL)ETHER
(Non-functional Binders)
PEG.3:
6 residues within 4Å:
Chain A:
Q.529
,
L.607
,
P.609
,
Y.612
,
D.721
,
Q.724
3
PLIP interactions
:
3 interactions with chain A
Hydrogen bonds:
A:Q.529
,
A:D.721
,
A:Q.724
PEG.5:
5 residues within 4Å:
Chain A:
L.267
,
L.277
Chain B:
A.664
,
S.665
,
E.710
1
PLIP interactions
:
1 interactions with chain B
Hydrogen bonds:
B:E.710
PEG.6:
4 residues within 4Å:
Chain B:
R.13
,
L.70
,
K.71
,
F.327
1
PLIP interactions
:
1 interactions with chain B
Hydrogen bonds:
B:R.13
PEG.7:
3 residues within 4Å:
Chain B:
E.347
,
R.352
,
Q.406
1
PLIP interactions
:
1 interactions with chain B
Hydrogen bonds:
B:E.347
2 x
MG
:
MAGNESIUM ION
(Non-covalent)
MG.4:
3 residues within 4Å:
Chain A:
D.661
,
V.663
,
E.713
6
PLIP interactions
:
2 interactions with chain A
,
4 Ligand-Water interactions
Metal complexes:
A:D.661
,
A:V.663
,
H
2
O.4
,
H
2
O.6
,
H
2
O.8
,
H
2
O.8
MG.9:
3 residues within 4Å:
Chain B:
D.661
,
V.663
,
E.713
6
PLIP interactions
:
2 interactions with chain B
,
4 Ligand-Water interactions
Metal complexes:
B:D.661
,
B:V.663
,
H
2
O.31
,
H
2
O.33
,
H
2
O.35
,
H
2
O.38
1 x
PGE
:
TRIETHYLENE GLYCOL
(Non-functional Binders)
PGE.8:
5 residues within 4Å:
Chain B:
Q.529
,
E.530
,
R.569
,
L.607
,
Y.612
4
PLIP interactions
:
4 interactions with chain B
Hydrogen bonds:
B:Q.529
,
B:R.569
,
B:R.569
Water bridges:
B:Q.724
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Mahasenan, K.V. et al., Catalytic Cycle of Glycoside Hydrolase BglX fromPseudomonas aeruginosaand Its Implications for Biofilm Formation. Acs Chem.Biol. (2020)
Release Date
2020-04-15
Peptides
Periplasmic beta-glucosidase:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
B
B
A
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Related Entries With Identical Sequence
6r5o.1
|
6r5r.1
|
6r5u.1
|
6r5v.1
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