SMTL ID : 6r66.1

Crystal structure of transthyretin in complex with CHF5075, a flurbiprofen analogue

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.30 Å

Oligo State

homo-tetramer

Ligands

4 x JTN: 1-[4-[3,5-bis(chloranyl)phenyl]-3-fluoranyl-phenyl]cyclopropane-1-carboxylic acid(Covalent)(Non-covalent)

JTN.1: 17 residues within 4Å: Chain A: K.35, L.37, A.128, A.129, L.130, S.137, T.138, T.139 Chain C: K.35, L.37, E.74, A.128, L.130, S.137, T.138, T.139 Ligands: JTN.3 9 PLIP interactions: 4 interactions with chain A, 5 interactions with chain C Hydrophobic interactions: A:L.37, C:K.35, C:L.37, C:A.128, C:L.130 Water bridges: A:K.35 Salt bridges: A:K.35, C:K.35 Halogen bonds: A:A.129 JTN.2: 16 residues within 4Å: Chain B: K.35, L.37, A.128, A.129, L.130, S.137, T.138, T.139 Chain D: K.35, L.37, E.74, A.128, S.137, T.138, T.139 Ligands: JTN.4 10 PLIP interactions: 6 interactions with chain D, 4 interactions with chain B Hydrophobic interactions: D:K.35, D:K.35, D:L.37, D:A.128, B:K.35, B:L.130 Hydrogen bonds: D:E.74 Salt bridges: D:K.35, B:K.35 Halogen bonds: B:S.137 JTN.3: 17 residues within 4Å: Chain A: K.35, L.37, E.74, A.128, L.130, S.137, T.138, T.139 Chain C: K.35, L.37, A.128, A.129, L.130, S.137, T.138, T.139 Ligands: JTN.1 9 PLIP interactions: 5 interactions with chain A, 4 interactions with chain C Hydrophobic interactions: A:K.35, A:L.37, A:A.128, A:L.130, C:L.37 Salt bridges: A:K.35, C:K.35 Water bridges: C:K.35 Halogen bonds: C:A.129 JTN.4: 16 residues within 4Å: Chain B: K.35, L.37, E.74, A.128, S.137, T.138, T.139 Chain D: K.35, L.37, A.128, A.129, L.130, S.137, T.138, T.139 Ligands: JTN.2 10 PLIP interactions: 6 interactions with chain B, 4 interactions with chain D Hydrophobic interactions: B:K.35, B:K.35, B:L.37, B:A.128, D:K.35, D:L.130 Hydrogen bonds: B:E.74 Salt bridges: B:K.35, D:K.35 Halogen bonds: D:S.137

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Loconte, V. et al., Structure-activity relationships of flurbiprofen analogues as stabilizers of the amyloidogenic protein transthyretin. J.Struct.Biol. (2019)

Release Date

2019-09-11

Peptides

Transthyretin: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Transthyretin

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