SMTL ID : 6r6k.1 (1 other biounit)

Structure of a FpvC mutant from pseudomonas aeruginosa

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

6 x NA: SODIUM ION(Non-functional Binders)

NA.1: 1 residues within 4Å: Chain A: Y.17 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.17 NA.2: 5 residues within 4Å: Chain A: G.65, K.106, P.110 Ligands: EDO.17, EDO.24 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.65, A:K.106 NA.3: 3 residues within 4Å: Chain A: Q.238, K.244, L.245 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.245 NA.4: 3 residues within 4Å: Chain A: K.106, E.226 Ligands: EDO.23 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.106, A:E.226 NA.5: 3 residues within 4Å: Chain A: V.84, E.86 Ligands: EDO.19 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.86 Water bridges: A:V.84 NA.6: 1 residues within 4Å: Chain A: P.205 No protein-ligand interaction detected (PLIP)

20 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.7: 6 residues within 4Å: Chain A: N.22, N.144, A.147, Y.148, R.151 Ligands: PEG.36 Ligand excluded by PLIP EDO.8: 6 residues within 4Å: Chain A: G.63, V.64, G.65, D.68, E.71 Ligands: EDO.24 Ligand excluded by PLIP EDO.9: 5 residues within 4Å: Chain A: G.63, V.64, E.86, N.88, A.89 Ligand excluded by PLIP EDO.10: 4 residues within 4Å: Chain A: S.117, R.156, R.185, E.186 Ligand excluded by PLIP EDO.11: 3 residues within 4Å: Chain A: A.75, P.80 Ligands: PEG.34 Ligand excluded by PLIP EDO.12: 4 residues within 4Å: Chain A: S.117, I.120, R.153, R.156 Ligand excluded by PLIP EDO.13: 6 residues within 4Å: Chain A: I.120, N.124, A.145, R.146, A.149, R.153 Ligand excluded by PLIP EDO.14: 5 residues within 4Å: Chain A: P.205, L.208, K.209, T.236, E.240 Ligand excluded by PLIP EDO.15: 2 residues within 4Å: Chain A: E.264, R.267 Ligand excluded by PLIP EDO.16: 5 residues within 4Å: Chain A: S.249, G.250, I.251, S.252 Ligands: EDO.22 Ligand excluded by PLIP EDO.17: 6 residues within 4Å: Chain A: N.109, P.110, G.111, F.113, A.179 Ligands: NA.2 Ligand excluded by PLIP EDO.18: 5 residues within 4Å: Chain A: G.37, N.39, S.252, Y.253, G.254 Ligand excluded by PLIP EDO.19: 5 residues within 4Å: Chain A: V.84, I.85, E.86, E.129 Ligands: NA.5 Ligand excluded by PLIP EDO.20: 2 residues within 4Å: Chain A: R.156, L.160 Ligand excluded by PLIP EDO.21: 5 residues within 4Å: Chain A: A.96, A.101, R.102, K.106, V.107 Ligand excluded by PLIP EDO.22: 5 residues within 4Å: Chain A: A.179, Y.180, E.226, G.250 Ligands: EDO.16 Ligand excluded by PLIP EDO.23: 6 residues within 4Å: Chain A: A.100, A.101, G.177, G.178, E.226 Ligands: NA.4 Ligand excluded by PLIP EDO.24: 6 residues within 4Å: Chain A: G.65, D.68, K.106 Ligands: NA.2, EDO.8, GOL.31 Ligand excluded by PLIP EDO.25: 5 residues within 4Å: Chain A: Y.253, D.255, S.257, K.260, E.263 Ligand excluded by PLIP EDO.26: 8 residues within 4Å: Chain A: I.227, D.228, F.229, V.234, L.245, Y.246, S.247 Ligands: PEG.35 Ligand excluded by PLIP

5 x GOL: GLYCEROL(Non-functional Binders)

GOL.27: 5 residues within 4Å: Chain A: P.92, S.115, S.117, A.118, Y.182 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.115 GOL.28: 4 residues within 4Å: Chain A: L.208, T.232, Y.233, T.236 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.232, A:T.236, A:T.236 GOL.29: 2 residues within 4Å: Chain A: A.75, S.76 No protein-ligand interaction detected (PLIP) GOL.30: 10 residues within 4Å: Chain A: T.12, L.13, H.14, I.34, F.38, N.39, P.40, I.251, S.252, Y.256 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:H.14, A:I.251, A:Y.256, A:Y.256 Water bridges: A:N.39 GOL.31: 7 residues within 4Å: Chain A: P.40, G.65, G.66, D.67, D.68, F.69 Ligands: EDO.24 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.65, A:D.68, A:F.69

5 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.32: 2 residues within 4Å: Chain A: A.193, V.194 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.194, A:V.194 PEG.33: 5 residues within 4Å: Chain A: V.31, P.32, P.35, A.36, R.52 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.36 PEG.34: 4 residues within 4Å: Chain A: K.79, P.80, G.81 Ligands: EDO.11 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.81 PEG.35: 5 residues within 4Å: Chain A: S.247, R.267, N.268, T.271 Ligands: EDO.26 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.247, A:N.268, A:T.271 PEG.36: 5 residues within 4Å: Chain A: S.21, N.22, G.25, A.258 Ligands: EDO.7 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.22, A:G.25

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vigouroux, A. et al., A unique ferrous iron binding mode is associated with large conformational changes for the transport protein FpvC of Pseudomonas aeruginosa. Febs J. (2020)

Release Date

2019-07-31

Peptides

ABC transporter substrate-binding protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

ABC transporter substrate-binding protein

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