SMTL ID : 6r77.1

Crystal structure of trans-3-Hydroxy-L-proline dehydratase in complex with substrate - closed conformation

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x HY3: 3-HYDROXYPROLINE(Non-covalent)

HY3.1: 13 residues within 4Å: Chain A: E.50, Y.96, M.123, C.124, G.125, H.126, Y.208, Y.257, F.278, D.284, T.288, G.289, T.290 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:F.278 Hydrogen bonds: A:Y.96, A:G.125, A:H.126, A:H.126, A:Y.208, A:Y.257, A:D.284, A:S.286, A:G.289, A:T.290, A:T.290, A:T.290, A:T.290 HY3.2: 13 residues within 4Å: Chain B: E.50, Y.96, C.124, G.125, H.126, Y.208, Y.257, F.278, D.284, S.286, T.288, G.289, T.290 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:F.278 Hydrogen bonds: B:G.125, B:H.126, B:D.284, B:S.286, B:S.286, B:G.289, B:T.290, B:T.290 Water bridges: B:Y.208, B:Y.208 Salt bridges: B:H.126

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ferraris, D.M. et al., Structure of Thermococcus litoralis trans-3-hydroxy-l-proline dehydratase in the free and substrate-complexed form. Biochem.Biophys.Res.Commun. (2019)

Release Date

2019-07-03

Peptides

Proline racemase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Proline racemase

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