SMTL ID : 6r7a.1

Ligand complex of RORg LBD

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.13 Å

Oligo State

hetero-1-1-mer

Ligands

1 x JUE: ~{N}-[(1~{R})-1-(4-methoxyphenyl)-2-oxidanylidene-2-[(4-propan-2-ylphenyl)amino]ethyl]-2-oxidanylidene-3~{H}-pyridine-5-carboxamide(Non-covalent)

JUE.1: 13 residues within 4Å: Chain A: Q.44, L.45, C.78, H.80, H.81, E.84, A.126, V.134, F.135, F.136, E.137, F.146, I.155 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:L.45, A:A.126, A:V.134, A:V.134, A:F.136, A:E.137, A:F.146, A:F.146 Hydrogen bonds: A:E.84, A:F.135, A:E.137 Water bridges: A:Q.44, A:E.84, A:E.84 pi-Stacking: A:H.81

1 x NA: SODIUM ION(Non-functional Binders)

NA.2: 3 residues within 4Å: Chain A: C.124, Y.127, S.166 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.127 Water bridges: A:S.166

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

von Berg, S. et al., Discovery of Potent and Orally Bioavailable Inverse Agonists of the Retinoic Acid Receptor-Related Orphan Receptor C2. Acs Med.Chem.Lett. (2019)

Release Date

2019-07-03

Peptides

Nuclear receptor ROR-gamma: A
LYS-HIS-LYS-ILE-LEU-HIS-ARG-LEU-LEU-GLN-ASP-SER: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Nuclear receptor ROR-gamma

LYS-HIS-LYS-ILE-LEU-HIS-ARG-LEU-LEU-GLN-ASP-SER

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