SMTL ID : 6r7k.1

Ligand complex of RORg LBD

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.54 Å

Oligo State

hetero-1-1-mer

Ligands

1 x JUH: (2~{R})-2-(4-ethylsulfonylphenyl)-~{N}-[4-[1,1,1,3,3,3-hexakis(fluoranyl)-2-oxidanyl-propan-2-yl]phenyl]-2-(2-phenylethanoylamino)ethanamide(Non-covalent)

JUH.1: 19 residues within 4Å: Chain A: C.43, Q.44, L.45, L.50, C.78, H.81, L.82, R.122, M.123, R.125, A.126, F.135, F.136, E.137, G.138, F.146, I.155, I.158 Ligands: DMS.3 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:Q.44, A:L.45, A:H.81, A:R.122, A:A.126 Hydrogen bonds: A:F.135, A:E.137 Water bridges: A:Q.44, A:Q.44 pi-Stacking: A:F.136 Halogen bonds: A:C.78

1 x NA: SODIUM ION(Non-functional Binders)

NA.2: 4 residues within 4Å: Chain A: R.54, C.124, Y.127, S.166 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.54, A:C.124 Water bridges: A:S.166

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.3: 8 residues within 4Å: Chain A: W.75, C.78, L.82, C.151, L.154, H.237, Y.260 Ligands: JUH.1 1 PLIP interactions: 1 interactions with chain A pi-Cation interactions: A:W.75

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

von Berg, S. et al., Discovery of Potent and Orally Bioavailable Inverse Agonists of the Retinoic Acid Receptor-Related Orphan Receptor C2. Acs Med.Chem.Lett. (2019)

Release Date

2019-07-03

Peptides

Nuclear receptor ROR-gamma: A
SRC2 peptide: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Nuclear receptor ROR-gamma

SRC2 peptide

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