SMTL ID : 6r8b.1

Escherichia coli AGPase in complex with FBP.

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-tetramer

Ligands

4 x FBP: 1,6-di-O-phosphono-beta-D-fructofuranose(Non-covalent)

FBP.1: 11 residues within 4Å: Chain A: K.39, R.40, H.46, R.52, T.79, R.386, A.387, R.419, E.420, R.423 Chain B: R.130 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:T.79, A:T.79, A:R.419 Salt bridges: A:K.39, A:R.40, A:H.46, A:R.52, A:R.386, A:R.419, A:R.423 FBP.2: 11 residues within 4Å: Chain A: R.130 Chain B: K.39, R.40, H.46, R.52, T.79, R.386, A.387, R.419, E.420, R.423 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:T.79, B:T.79, B:R.419 Salt bridges: B:K.39, B:R.40, B:H.46, B:R.52, B:R.386, B:R.419, B:R.423 FBP.3: 11 residues within 4Å: Chain C: K.39, R.40, H.46, R.52, T.79, R.386, A.387, R.419, E.420, R.423 Chain D: R.130 11 PLIP interactions: 11 interactions with chain C Hydrogen bonds: C:T.79, C:T.79, C:R.419, C:E.420 Salt bridges: C:K.39, C:R.40, C:H.46, C:R.52, C:R.386, C:R.419, C:R.423 FBP.4: 11 residues within 4Å: Chain C: R.130 Chain D: K.39, R.40, H.46, R.52, T.79, R.386, A.387, R.419, E.420, R.423 11 PLIP interactions: 11 interactions with chain D Hydrogen bonds: D:T.79, D:T.79, D:R.419, D:E.420 Salt bridges: D:K.39, D:R.40, D:H.46, D:R.52, D:R.386, D:R.419, D:R.423

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cifuente, J.O. et al., The allosteric control mechanism of bacterial glycogen biosynthesis disclosed by cryoEM. Biorxiv (2020)

Release Date

2020-02-05

Peptides

Glucose-1-phosphate adenylyltransferase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
B

C
A

D
C

Glucose-1-phosphate adenylyltransferase

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