SMTL ID : 6r8n.1

STRUCTURE DETERMINATION OF THE TETRAHEDRAL AMINOPEPTIDASE TET2 FROM P. HORIKOSHII BY USE OF COMBINED SOLID-STATE NMR, SOLUTION-STATE NMR AND EM DATA 4.1 A, FOLLOWED BY REAL_SPACE_REFINEMENT AT 4.1 A

Coordinates

PDB Format Compare

Method

SOLUTION NMR

Oligo State

homo-12-mer

Ligands

24 x ZN: ZINC ION(Non-covalent)(Non-functional Binders)

ZN.1: 5 residues within 4Å: Chain A: H.68, D.182, E.213, D.235, V.236 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:E.213 ZN.2: 1 residues within 4Å: Chain A: G.297 No protein-ligand interaction detected (PLIP) ZN.3: 5 residues within 4Å: Chain B: H.68, D.182, E.213, D.235, V.236 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:E.213 ZN.4: 1 residues within 4Å: Chain B: G.297 No protein-ligand interaction detected (PLIP) ZN.5: 5 residues within 4Å: Chain C: H.68, D.182, E.213, D.235, V.236 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:E.213 ZN.6: 1 residues within 4Å: Chain C: G.297 No protein-ligand interaction detected (PLIP) ZN.7: 5 residues within 4Å: Chain D: H.68, D.182, E.213, D.235, V.236 1 PLIP interactions: 1 interactions with chain D Metal complexes: D:E.213 ZN.8: 1 residues within 4Å: Chain D: G.297 No protein-ligand interaction detected (PLIP) ZN.9: 5 residues within 4Å: Chain E: H.68, D.182, E.213, D.235, V.236 1 PLIP interactions: 1 interactions with chain E Metal complexes: E:E.213 ZN.10: 1 residues within 4Å: Chain E: G.297 No protein-ligand interaction detected (PLIP) ZN.11: 5 residues within 4Å: Chain F: H.68, D.182, E.213, D.235, V.236 1 PLIP interactions: 1 interactions with chain F Metal complexes: F:E.213 ZN.12: 1 residues within 4Å: Chain F: G.297 No protein-ligand interaction detected (PLIP) ZN.13: 5 residues within 4Å: Chain G: H.68, D.182, E.213, D.235, V.236 1 PLIP interactions: 1 interactions with chain G Metal complexes: G:E.213 ZN.14: 1 residues within 4Å: Chain G: G.297 No protein-ligand interaction detected (PLIP) ZN.15: 5 residues within 4Å: Chain H: H.68, D.182, E.213, D.235, V.236 1 PLIP interactions: 1 interactions with chain H Metal complexes: H:E.213 ZN.16: 1 residues within 4Å: Chain H: G.297 No protein-ligand interaction detected (PLIP) ZN.17: 5 residues within 4Å: Chain I: H.68, D.182, E.213, D.235, V.236 1 PLIP interactions: 1 interactions with chain I Metal complexes: I:E.213 ZN.18: 1 residues within 4Å: Chain I: G.297 No protein-ligand interaction detected (PLIP) ZN.19: 5 residues within 4Å: Chain J: H.68, D.182, E.213, D.235, V.236 1 PLIP interactions: 1 interactions with chain J Metal complexes: J:E.213 ZN.20: 1 residues within 4Å: Chain J: G.297 No protein-ligand interaction detected (PLIP) ZN.21: 5 residues within 4Å: Chain K: H.68, D.182, E.213, D.235, V.236 1 PLIP interactions: 1 interactions with chain K Metal complexes: K:E.213 ZN.22: 1 residues within 4Å: Chain K: G.297 No protein-ligand interaction detected (PLIP) ZN.23: 5 residues within 4Å: Chain L: H.68, D.182, E.213, D.235, V.236 1 PLIP interactions: 1 interactions with chain L Metal complexes: L:E.213 ZN.24: 1 residues within 4Å: Chain L: G.297 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gauto, D.F. et al., Integrated NMR and cryo-EM atomic-resolution structure determination of a half-megadalton enzyme complex. Nat Commun (2019)

Release Date

2019-08-14

Peptides

Tetrahedral aminopeptidase: ABCDEFGHIJKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

Tetrahedral aminopeptidase

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