SMTL ID : 6r99.1

Crystal Structure of Human CLN protein 5 (Ceroid Lipofuscinosis Neuronal Protein 5)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

monomer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 9 residues within 4Å: Chain A: Y.118, C.119, Q.120, A.121, K.122, F.188, Q.189, N.192, H.197 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.120

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.2: 9 residues within 4Å: Chain A: R.112, F.125, C.126, P.127, G.129, I.132, A.212, A.213, N.252 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.129

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 5 residues within 4Å: Chain A: F.144, R.172, N.179, I.219, D.221 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:F.144, A:I.219 Hydrogen bonds: A:N.179, A:D.221, A:D.221 Water bridges: A:N.179 NAG.4: 5 residues within 4Å: Chain A: E.302, N.304, Y.392, E.393, E.394 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.302, A:N.304, A:E.394

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Luebben, A.V. et al., Cln5 represents a new type of cysteine-based S -depalmitoylase linked to neurodegeneration. Sci Adv (2022)

Release Date

2020-04-22

Peptides

Ceroid-lipofuscinosis neuronal protein 5: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Ceroid-lipofuscinosis neuronal protein 5