SMTL ID : 6rad.1

Salmonella ATPase InvC with ADP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

monomer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 8 residues within 4Å: Chain A: S.82, G.84, C.85, G.86, K.87, T.88, M.89, Y.260 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:G.84, A:C.85, A:G.86, A:K.87, A:T.88, A:T.88, A:M.89 Salt bridges: A:K.87 pi-Stacking: A:Y.260

1 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.2: 8 residues within 4Å: Chain A: V.73, D.101, G.163, K.164, R.165, E.216, G.217, S.218 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:G.163, A:G.217, A:S.218 Salt bridges: A:D.101, A:R.165, A:E.216

7 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 3 residues within 4Å: Chain A: R.241, R.271 Ligands: GOL.8 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.241, A:R.271 GOL.4: 3 residues within 4Å: Chain A: P.46, S.47, S.50 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.47, A:S.50 GOL.5: 2 residues within 4Å: Chain A: A.44, R.206 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.44, A:R.206 GOL.6: 1 residues within 4Å: Chain A: Q.335 No protein-ligand interaction detected (PLIP) GOL.7: 3 residues within 4Å: Chain A: T.214, S.215, E.216 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.214, A:S.215 GOL.8: 2 residues within 4Å: Chain A: R.271 Ligands: GOL.3 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.271, A:R.271 GOL.9: 3 residues within 4Å: Chain A: P.141, S.142, D.182 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.142, A:S.142, A:D.182

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.10: 4 residues within 4Å: Chain A: Y.249, S.251, R.252, K.253 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.249, A:R.252, A:K.253

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bernal, I. et al., Structural analysis of ligand-bound states of the Salmonella type III secretion system ATPase InvC. Protein Sci. (2019)

Release Date

2019-08-21

Peptides

Secretory apparatus ATP synthase (Associated with virulence): A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Secretory apparatus ATP synthase (Associated with virulence)

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