SMTL ID : 6rb4.1

Crystal structure of the Pri1 subunit of human primase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 4 residues within 4Å: Chain A: T.2, M.4, R.332, F.348 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.332 Water bridges: A:T.2, A:M.4 EDO.2: 6 residues within 4Å: Chain A: K.156, H.157, R.158, H.400, F.401, N.404 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.158, A:N.404 Water bridges: A:R.158 EDO.3: 4 residues within 4Å: Chain A: R.332, F.348, T.349, F.355 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:F.348 Water bridges: A:R.332, A:R.332, A:R.332 EDO.4: 6 residues within 4Å: Chain A: E.209, N.284, N.285, N.288, K.290, W.294 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.209, A:N.288, A:K.290 Water bridges: A:N.284

1 x ZN: ZINC ION(Non-covalent)

ZN.5: 7 residues within 4Å: Chain A: R.122, C.124, C.125, I.130, C.131, K.133, C.134 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.124, A:C.125, A:C.131, A:C.134

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Holzer, S. et al., Structural Basis for Inhibition of Human Primase by Arabinofuranosyl Nucleoside Analogues Fludarabine and Vidarabine. Acs Chem.Biol. (2019)

Release Date

2019-09-11

Peptides

DNA primase small subunit: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DNA primase small subunit

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