- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-2-2-2-2-2-2-2-2-2-2-20-2-2-2-2-2-6-6-mer
- Ligands
- 2 x ZN: ZINC ION(Non-covalent)
- 6 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)
ATP.2: 18 residues within 4Å:- Chain 2: S.384, R.385, Y.397, R.401
- Chain Z: R.227, Q.228, T.229, G.230, K.231, T.232, A.233, E.384, F.413, R.418, P.419, Q.486, Q.488
- Ligands: MG.3
17 PLIP interactions:13 interactions with chain Z, 4 interactions with chain 2- Hydrogen bonds: Z:Q.228, Z:Q.228, Z:T.229, Z:G.230, Z:K.231, Z:T.232, Z:A.233, Z:E.384, Z:Q.486, Z:Q.488, 2:S.384, 2:R.385, 2:R.385, 2:R.401
- Salt bridges: Z:K.231, Z:K.231
- pi-Stacking: Z:F.413
ATP.4: 17 residues within 4Å:- Chain 0: R.227, Q.228, T.229, G.230, K.231, T.232, A.233, E.384, F.413, R.418, P.419, Q.486, K.487, Q.488
- Chain 4: R.385, N.388
- Ligands: MG.5
18 PLIP interactions:15 interactions with chain 0, 3 interactions with chain 4- Hydrogen bonds: 0:D.226, 0:Q.228, 0:T.229, 0:T.229, 0:G.230, 0:K.231, 0:T.232, 0:A.233, 0:R.418, 0:Q.486, 0:Q.488, 0:Q.488, 4:R.385
- Salt bridges: 0:K.231, 0:K.231, 4:R.385, 4:R.385
- pi-Stacking: 0:F.413
ATP.6: 18 residues within 4Å:- Chain 1: D.226, R.227, Q.228, T.229, G.230, K.231, T.232, A.233, F.413, R.418, P.419, Q.486, K.487, Q.488
- Chain 3: R.385, N.388, Y.397
- Ligands: MG.7
19 PLIP interactions:16 interactions with chain 1, 3 interactions with chain 3- Hydrogen bonds: 1:Q.228, 1:Q.228, 1:T.229, 1:T.229, 1:G.230, 1:K.231, 1:T.232, 1:A.233, 1:R.418, 1:Q.486, 1:K.487, 1:Q.488, 1:Q.488, 3:S.384, 3:N.388
- Salt bridges: 1:K.231, 1:K.231, 3:R.385
- pi-Stacking: 1:F.413
ATP.13: 18 residues within 4Å:- Ligands: MG.14
- Chain u: R.227, Q.228, T.229, G.230, K.231, T.232, A.233, E.384, F.413, R.418, P.419, Q.486, Q.488
- Chain x: S.384, R.385, Y.397, R.401
17 PLIP interactions:13 interactions with chain u, 4 interactions with chain x- Hydrogen bonds: u:Q.228, u:Q.228, u:T.229, u:G.230, u:K.231, u:T.232, u:A.233, u:E.384, u:Q.486, u:Q.488, x:S.384, x:R.385, x:R.385, x:R.401
- Salt bridges: u:K.231, u:K.231
- pi-Stacking: u:F.413
ATP.15: 17 residues within 4Å:- Ligands: MG.16
- Chain v: R.227, Q.228, T.229, G.230, K.231, T.232, A.233, E.384, F.413, R.418, P.419, Q.486, K.487, Q.488
- Chain z: R.385, N.388
19 PLIP interactions:16 interactions with chain v, 3 interactions with chain z- Hydrogen bonds: v:D.226, v:Q.228, v:T.229, v:T.229, v:G.230, v:K.231, v:T.232, v:T.232, v:A.233, v:R.418, v:Q.486, v:Q.488, v:Q.488, z:R.385
- Salt bridges: v:K.231, v:K.231, z:R.385, z:R.385
- pi-Stacking: v:F.413
ATP.17: 18 residues within 4Å:- Ligands: MG.18
- Chain w: D.226, R.227, Q.228, T.229, G.230, K.231, T.232, A.233, F.413, R.418, P.419, Q.486, K.487, Q.488
- Chain y: R.385, N.388, Y.397
19 PLIP interactions:16 interactions with chain w, 3 interactions with chain y- Hydrogen bonds: w:Q.228, w:Q.228, w:T.229, w:T.229, w:G.230, w:K.231, w:T.232, w:A.233, w:R.418, w:Q.486, w:K.487, w:Q.488, w:Q.488, y:S.384, y:N.388
- Salt bridges: w:K.231, w:K.231, y:R.385
- pi-Stacking: w:F.413
- 10 x MG: MAGNESIUM ION(Non-covalent)
MG.3: 3 residues within 4Å:- Chain Z: T.232, D.325
- Ligands: ATP.2
1 PLIP interactions:1 interactions with chain Z- Metal complexes: Z:T.232
MG.5: 3 residues within 4Å:- Chain 0: T.232, D.325
- Ligands: ATP.4
1 PLIP interactions:1 interactions with chain 0- Metal complexes: 0:T.232
MG.7: 3 residues within 4Å:- Chain 1: T.232, D.325
- Ligands: ATP.6
1 PLIP interactions:1 interactions with chain 1- Metal complexes: 1:T.232
MG.9: 5 residues within 4Å:- Chain 2: T.190, E.215, R.216, E.219
- Ligands: ADP.8
2 PLIP interactions:2 interactions with chain 2- Metal complexes: 2:T.190, 2:E.215
MG.11: 6 residues within 4Å:- Chain 3: T.190, E.215, R.216, E.219, D.285
- Ligands: ADP.10
1 PLIP interactions:1 interactions with chain 3- Metal complexes: 3:T.190
MG.14: 3 residues within 4Å:- Ligands: ATP.13
- Chain u: T.232, D.325
1 PLIP interactions:1 interactions with chain u- Metal complexes: u:T.232
MG.16: 3 residues within 4Å:- Ligands: ATP.15
- Chain v: T.232, D.325
1 PLIP interactions:1 interactions with chain v- Metal complexes: v:T.232
MG.18: 3 residues within 4Å:- Ligands: ATP.17
- Chain w: T.232, D.325
1 PLIP interactions:1 interactions with chain w- Metal complexes: w:T.232
MG.20: 5 residues within 4Å:- Ligands: ADP.19
- Chain x: T.190, E.215, R.216, E.219
2 PLIP interactions:2 interactions with chain x- Metal complexes: x:T.190, x:E.215
MG.22: 6 residues within 4Å:- Ligands: ADP.21
- Chain y: T.190, E.215, R.216, E.219, D.285
1 PLIP interactions:1 interactions with chain y- Metal complexes: y:T.190
- 4 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
ADP.8: 16 residues within 4Å:- Chain 0: V.427, R.429
- Chain 2: A.185, G.186, V.187, G.188, K.189, T.190, V.191, E.219, Y.374, F.447, A.450, F.453, T.454
- Ligands: MG.9
12 PLIP interactions:2 interactions with chain 0, 10 interactions with chain 2- Hydrogen bonds: 0:R.429, 0:R.429, 2:G.186, 2:V.187, 2:G.188, 2:K.189, 2:T.190, 2:T.190, 2:V.191
- Salt bridges: 2:K.189
- pi-Stacking: 2:Y.374, 2:Y.374
ADP.10: 14 residues within 4Å:- Chain 3: G.184, G.186, V.187, G.188, K.189, T.190, V.191, Y.374, F.447, A.450, F.453, T.454
- Chain Z: R.429
- Ligands: MG.11
11 PLIP interactions:9 interactions with chain 3, 2 interactions with chain Z- Hydrogen bonds: 3:G.186, 3:V.187, 3:G.188, 3:K.189, 3:T.190, 3:V.191
- Salt bridges: 3:K.189, Z:R.429, Z:R.429
- pi-Stacking: 3:Y.374, 3:Y.374
ADP.19: 16 residues within 4Å:- Ligands: MG.20
- Chain v: V.427, R.429
- Chain x: A.185, G.186, V.187, G.188, K.189, T.190, V.191, E.219, Y.374, F.447, A.450, F.453, T.454
12 PLIP interactions:10 interactions with chain x, 2 interactions with chain v- Hydrogen bonds: x:G.186, x:V.187, x:G.188, x:K.189, x:T.190, x:T.190, x:V.191, v:R.429, v:R.429
- Salt bridges: x:K.189
- pi-Stacking: x:Y.374, x:Y.374
ADP.21: 14 residues within 4Å:- Ligands: MG.22
- Chain u: R.429
- Chain y: G.184, G.186, V.187, G.188, K.189, T.190, V.191, Y.374, F.447, A.450, F.453, T.454
11 PLIP interactions:2 interactions with chain u, 9 interactions with chain y- Salt bridges: u:R.429, u:R.429, y:K.189
- Hydrogen bonds: y:G.186, y:V.187, y:G.188, y:K.189, y:T.190, y:V.191
- pi-Stacking: y:Y.374, y:Y.374
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
-
Murphy, B.J. et al., Rotary substates of mitochondrial ATP synthase reveal the basis of flexible F 1 -F o coupling. Science (2019)
- Release Date
- 2019-07-03
- Peptides
- ASA-10: Polytomella F-ATP synthase associated subunit 10: A5
ATP synthase associated protein ASA1: B6
Mitochondrial ATP synthase subunit ASA2: C7
Mitochondrial F1F0 ATP synthase associated 32 kDa protein: D8
Mitochondrial ATP synthase associated protein ASA4: E9
Mitochondrial F1F0 ATP synthase associated 14 kDa protein: Fa
Mitochondrial ATP synthase subunit ASA6: Gb
Mitochondrial ATP synthase associated protein ASA7: Hc
Mitochondrial ATP synthase subunit ASA8: Id
Mitochondrial ATP synthase subunit ASA9: Je
Mitochondrial ATP synthase subunit c: KLMNOPQRSTfghijklmno
Mitochondrial ATP synthase subunit 6: Up
Mitochondrial ATP synthase subunit OSCP: Vq
epsilon: Polytomella F-ATP synthase epsilon subunit: Wr
Mitochondrial ATP synthase subunit delta: Xs
ATP synthase gamma chain, mitochondrial: Yt
ATP synthase subunit alpha: Z01uvw
ATP synthase subunit beta: 234xyz - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
05
0B
16
1C
27
2D
38
3E
49
4F
5a
5G
6b
6H
7c
7I
8d
8J
9e
9K
AL
BM
CN
DO
EP
FQ
GR
HS
IT
Jf
Ag
Bh
Ci
Dj
Ek
Fl
Gm
Hn
Io
JU
Mp
MV
Pq
PW
Qr
QX
Rs
RY
St
SZ
T0
U1
Vu
Tv
Uw
V2
X3
Y4
Zx
Xy
Yz
Z
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-2-2-2-2-2-2-2-2-2-2-20-2-2-2-2-2-6-6-mer
- Ligands
- 2 x ZN: ZINC ION(Non-covalent)
- 6 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)
- 10 x MG: MAGNESIUM ION(Non-covalent)
- 4 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
-
Murphy, B.J. et al., Rotary substates of mitochondrial ATP synthase reveal the basis of flexible F 1 -F o coupling. Science (2019)
- Release Date
- 2019-07-03
- Peptides
- ASA-10: Polytomella F-ATP synthase associated subunit 10: A5
ATP synthase associated protein ASA1: B6
Mitochondrial ATP synthase subunit ASA2: C7
Mitochondrial F1F0 ATP synthase associated 32 kDa protein: D8
Mitochondrial ATP synthase associated protein ASA4: E9
Mitochondrial F1F0 ATP synthase associated 14 kDa protein: Fa
Mitochondrial ATP synthase subunit ASA6: Gb
Mitochondrial ATP synthase associated protein ASA7: Hc
Mitochondrial ATP synthase subunit ASA8: Id
Mitochondrial ATP synthase subunit ASA9: Je
Mitochondrial ATP synthase subunit c: KLMNOPQRSTfghijklmno
Mitochondrial ATP synthase subunit 6: Up
Mitochondrial ATP synthase subunit OSCP: Vq
epsilon: Polytomella F-ATP synthase epsilon subunit: Wr
Mitochondrial ATP synthase subunit delta: Xs
ATP synthase gamma chain, mitochondrial: Yt
ATP synthase subunit alpha: Z01uvw
ATP synthase subunit beta: 234xyz - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
05
0B
16
1C
27
2D
38
3E
49
4F
5a
5G
6b
6H
7c
7I
8d
8J
9e
9K
AL
BM
CN
DO
EP
FQ
GR
HS
IT
Jf
Ag
Bh
Ci
Dj
Ek
Fl
Gm
Hn
Io
JU
Mp
MV
Pq
PW
Qr
QX
Rs
RY
St
SZ
T0
U1
Vu
Tv
Uw
V2
X3
Y4
Zx
Xy
Yz
Z