SMTL ID : 6ren.1 (1 other biounit)

Crystal structure of 3fPizza6-SH with Zn2+

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.30 Å

Oligo State

monomer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 3 residues within 4Å: Chain A: H.62, H.146, H.230 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.62, A:H.146, A:H.230, H2O.10 ZN.2: 5 residues within 4Å: Chain A: H.203, H.230, H.245 Ligands: IPA.6, IPA.7 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.203, A:H.230, A:H.245 ZN.3: 5 residues within 4Å: Chain A: H.119, H.146, H.161 Ligands: IPA.5, IPA.11 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.119, A:H.146, A:H.161 ZN.4: 5 residues within 4Å: Chain A: H.35, H.62, H.77 Ligands: IPA.9, IPA.10 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.35, A:H.62, A:H.77

7 x IPA: ISOPROPYL ALCOHOL(Non-functional Binders)

IPA.5: 6 residues within 4Å: Chain A: H.119, H.146, H.161 Ligands: ZN.3, IPA.9, IPA.11 No protein-ligand interaction detected (PLIP) IPA.6: 7 residues within 4Å: Chain A: H.203, H.230, H.245 Ligands: ZN.2, IPA.7, IPA.11, GOL.12 No protein-ligand interaction detected (PLIP) IPA.7: 6 residues within 4Å: Chain A: T.18, H.35, H.245 Ligands: ZN.2, IPA.6, IPA.10 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:T.18 IPA.8: 2 residues within 4Å: Chain A: N.38, N.59 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.38 Water bridges: A:T.60 IPA.9: 6 residues within 4Å: Chain A: H.77, T.102, H.119 Ligands: ZN.4, IPA.5, IPA.10 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:T.102 Hydrogen bonds: A:H.77 IPA.10: 6 residues within 4Å: Chain A: H.35, H.62, H.77 Ligands: ZN.4, IPA.7, IPA.9 No protein-ligand interaction detected (PLIP) IPA.11: 7 residues within 4Å: Chain A: H.161, T.186, H.203 Ligands: ZN.3, IPA.5, IPA.6, GOL.12 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:T.186

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.12: 4 residues within 4Å: Chain A: H.203, T.228 Ligands: IPA.6, IPA.11 2 PLIP interactions: 2 interactions with chain A Water bridges: A:N.206, A:T.228

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Clarke, D.E. et al., Artificial beta-propeller protein-based hydrolases. Chem.Commun.(Camb.) (2019)

Release Date

2019-07-31

Peptides

3fPizza6-SH: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

3fPizza6-SH

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