SMTL ID : 6rfy.1

Crystal structure of Eis2 form Mycobacterium abscessus

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-hexamer

Ligands

5 x BTB: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-covalent)

BTB.1: 9 residues within 4Å: Chain A: M.19, A.22, Y.23, F.26, R.28, T.81, A.82, E.120, F.411 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:A.22, A:R.28, A:A.82, A:E.120, A:F.411 Salt bridges: A:E.120 BTB.3: 8 residues within 4Å: Chain B: M.19, Y.23, F.26, R.28, T.81, A.82, V.83, E.120 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:R.28, B:T.81, B:A.82, B:E.120 Salt bridges: B:E.120 BTB.6: 8 residues within 4Å: Chain D: M.19, A.22, Y.23, F.26, R.28, A.82, T.84, E.120 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:R.28 Water bridges: D:T.81, D:F.411 Salt bridges: D:E.120 BTB.8: 9 residues within 4Å: Chain E: M.19, A.22, Y.23, F.26, R.28, T.81, A.82, T.84, E.120 6 PLIP interactions: 6 interactions with chain E Hydrogen bonds: E:R.28, E:R.28 Water bridges: E:Y.23, E:Y.23 Salt bridges: E:E.120 pi-Cation interactions: E:Y.23 BTB.10: 9 residues within 4Å: Chain F: M.19, A.22, Y.23, F.26, R.28, T.81, A.82, E.120, F.411 6 PLIP interactions: 6 interactions with chain F Hydrogen bonds: F:A.22, F:R.28, F:A.82, F:F.411 Water bridges: F:S.119 Salt bridges: F:E.120

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 7 residues within 4Å: Chain A: R.91, R.92, G.93, L.94, L.95, T.96, R.126 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:R.91, A:G.93, A:L.94, A:L.95, A:T.96, A:T.96 Water bridges: A:R.91, A:R.91, A:R.92, A:R.92 Salt bridges: A:R.126 SO4.4: 7 residues within 4Å: Chain B: R.91, R.92, G.93, L.94, L.95, T.96, R.126 12 PLIP interactions: 12 interactions with chain B Hydrogen bonds: B:R.91, B:G.93, B:G.93, B:L.94, B:L.95, B:T.96, B:T.96 Water bridges: B:R.91, B:R.91, B:R.92, B:R.92 Salt bridges: B:R.126 SO4.5: 7 residues within 4Å: Chain C: R.91, R.92, G.93, L.94, L.95, T.96, R.126 8 PLIP interactions: 8 interactions with chain C Hydrogen bonds: C:R.91, C:R.92, C:G.93, C:L.94, C:L.95, C:T.96, C:T.96 Salt bridges: C:R.126 SO4.7: 7 residues within 4Å: Chain D: R.91, R.92, G.93, L.94, L.95, T.96, R.126 9 PLIP interactions: 9 interactions with chain D Hydrogen bonds: D:R.91, D:R.91, D:G.93, D:L.94, D:L.95, D:T.96 Water bridges: D:R.92, D:R.92 Salt bridges: D:R.126 SO4.9: 7 residues within 4Å: Chain E: R.91, R.92, G.93, L.94, L.95, T.96, R.126 8 PLIP interactions: 8 interactions with chain E Hydrogen bonds: E:R.92, E:G.93, E:L.94, E:L.95, E:T.96 Water bridges: E:R.91, E:R.91 Salt bridges: E:R.126 SO4.11: 7 residues within 4Å: Chain F: R.91, R.92, G.93, L.94, L.95, T.96, R.126 7 PLIP interactions: 7 interactions with chain F Hydrogen bonds: F:R.91, F:R.92, F:G.93, F:L.94, F:L.95, F:T.96 Salt bridges: F:R.126

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ung, K.L. et al., Crystal structure of the aminoglycosides N-acetyltransferase Eis2 from Mycobacterium abscessus. Febs J. (2019)

Release Date

2019-07-10

Peptides

Eis2: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

Eis2

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