SMTL ID : 6rj8.1

Structure of the alpha-beta hydrolase CorS from Tabernathe iboga

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.42 Å

Oligo State

homo-dimer

Ligands

4 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.1: 9 residues within 4Å: Chain A: Y.19, H.32, A.85, L.89, F.96, Y.228, F.301, F.302 Ligands: EDO.5 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.206, A:Y.206 PG4.2: 6 residues within 4Å: Chain A: E.42, D.43, P.44, T.46, G.47, K.67 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.67 PG4.9: 9 residues within 4Å: Chain B: Y.19, H.32, A.85, L.89, F.96, Y.228, F.301, F.302 Ligands: EDO.13 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Y.206 Water bridges: B:Y.220 PG4.10: 6 residues within 4Å: Chain B: E.42, D.43, P.44, T.46, G.47, K.67 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:K.67

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.3: 5 residues within 4Å: Chain A: R.212, T.213, S.214, R.216, E.222 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.214, A:R.216, A:R.216 PEG.11: 5 residues within 4Å: Chain B: R.212, T.213, S.214, R.216, E.222 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:S.214, B:R.216, B:R.216

10 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 6 residues within 4Å: Chain A: L.210, I.211, R.212, R.226, T.240, D.241 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.226, A:T.240 Water bridges: A:R.212, A:T.240, A:T.240, A:N.246 EDO.5: 8 residues within 4Å: Chain A: A.85, G.86, S.175, P.176, Y.208, Y.225, Y.228 Ligands: PG4.1 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:A.85, A:G.86, A:S.175 Water bridges: A:Y.225, A:Y.225 EDO.6: 5 residues within 4Å: Chain A: Y.36, S.91, K.94, E.116 Chain B: Y.36 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.91, A:K.94, A:E.116 EDO.7: 3 residues within 4Å: Chain A: V.143, N.167, G.195 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.167, A:G.195 Water bridges: A:L.166 EDO.8: 4 residues within 4Å: Chain A: H.103, A.106, E.107, P.307 No protein-ligand interaction detected (PLIP) EDO.12: 6 residues within 4Å: Chain B: L.210, I.211, R.212, R.226, T.240, D.241 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:R.226, B:T.240, B:T.240 Water bridges: B:R.212, B:N.246 EDO.13: 8 residues within 4Å: Chain B: A.85, G.86, S.175, P.176, Y.208, Y.225, Y.228 Ligands: PG4.9 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:A.85, B:G.86, B:S.175 Water bridges: B:Y.225 EDO.14: 5 residues within 4Å: Chain A: Y.36 Chain B: Y.36, S.91, K.94, E.116 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:S.91, B:K.94, B:E.116 EDO.15: 3 residues within 4Å: Chain B: V.143, N.167, G.195 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.167, B:G.195 Water bridges: B:L.166 EDO.16: 4 residues within 4Å: Chain B: H.103, A.106, E.107, P.307 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:H.103

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Caputi, L. et al., Structural basis of cycloaddition in biosynthesis of iboga and aspidosperma alkaloids. Nat.Chem.Biol. (2020)

Release Date

2020-03-04

Peptides

alpha-beta hydrolase CorS: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

alpha-beta hydrolase CorS