SMTL ID : 6rk4.1

Lysostaphin SH3b P4-G5 complex, synchrotron dataset

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.43 Å

Oligo State

monomer

Ligands

1 x K5T: (2~{R})-2-[[(2~{S})-2-[[(4~{R})-5-azanyl-4-[[(2~{S})-2-azanylpropanoyl]amino]-5-oxidanylidene-pentanoyl]amino]-6-[2-[2-[2-[2-(2-azanylethanoylamino)ethanoylamino]ethanoylamino]ethanoylamino]ethanoylamino]hexanoyl]amino]propanoic acid(Non-covalent)

K5T.1: 14 residues within 4Å: Chain A: N.405, K.406, Y.407, T.409, Y.411, T.429, G.430, P.431, F.432, M.435, E.451, M.453, Y.472 Ligands: EDO.2 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:N.405, A:Y.411, A:T.429, A:E.451, A:Y.472 Water bridges: A:Y.407, A:Y.407

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 4 residues within 4Å: Chain A: E.451, R.470, Y.472 Ligands: K5T.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.470, A:R.470, A:Y.472 EDO.3: 5 residues within 4Å: Chain A: E.414, V.452, V.459, R.476, I.492 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.414, A:R.476, A:R.476

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gonzalez-Delgado, L.S. et al., Two-site recognition of Staphylococcus aureus peptidoglycan by lysostaphin SH3b. Nat.Chem.Biol. (2020)

Release Date

2019-10-16

Peptides

Lysostaphin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Lysostaphin