SMTL ID : 6rkd.1

Molybdenum storage protein under turnover conditions

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-6-6-mer

Ligands

12 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.1: 23 residues within 4Å: Chain A: K.45, G.47, G.48, R.49, G.79, A.80, G.81, R.85, E.190, N.191, V.192, G.194, I.195, Y.196, A.198, D.199, P.200, N.201, P.225, L.226, P.227 Chain B: S.16 Ligands: MG.2 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:G.48, A:R.49, A:A.80, A:G.81, A:R.85, A:N.191, A:N.191, A:Y.196, A:Y.196, A:N.201 Salt bridges: A:K.45, A:K.45 ATP.13: 26 residues within 4Å: Chain A: T.19 Chain B: K.42, G.44, G.45, Q.46, S.47, G.77, A.78, G.79, R.83, T.169, K.189, D.190, E.191, G.193, L.194, Y.195, A.197, N.198, P.199, K.200, L.221, D.223, S.224, I.225 Ligands: MOO.15 18 PLIP interactions: 17 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:G.45, B:Q.46, B:S.47, B:A.78, B:G.79, B:R.83, B:T.169, B:D.190, B:E.191, B:E.191, B:Y.195, B:Y.195, A:T.19 Salt bridges: B:K.42, B:K.42, B:R.83, B:K.189, B:K.189 ATP.17: 23 residues within 4Å: Chain C: K.45, G.47, G.48, R.49, G.79, A.80, G.81, R.85, E.190, N.191, V.192, G.194, I.195, Y.196, A.198, D.199, P.200, N.201, P.225, L.226, P.227 Chain D: S.16 Ligands: MG.18 12 PLIP interactions: 12 interactions with chain C Hydrogen bonds: C:G.48, C:R.49, C:A.80, C:G.81, C:R.85, C:N.191, C:N.191, C:Y.196, C:Y.196, C:N.201 Salt bridges: C:K.45, C:K.45 ATP.29: 26 residues within 4Å: Chain C: T.19 Chain D: K.42, G.44, G.45, Q.46, S.47, G.77, A.78, G.79, R.83, T.169, K.189, D.190, E.191, G.193, L.194, Y.195, A.197, N.198, P.199, K.200, L.221, D.223, S.224, I.225 Ligands: MOO.31 18 PLIP interactions: 17 interactions with chain D, 1 interactions with chain C Hydrogen bonds: D:G.45, D:Q.46, D:S.47, D:A.78, D:G.79, D:R.83, D:T.169, D:D.190, D:E.191, D:E.191, D:Y.195, D:Y.195, C:T.19 Salt bridges: D:K.42, D:K.42, D:R.83, D:K.189, D:K.189 ATP.33: 23 residues within 4Å: Chain E: K.45, G.47, G.48, R.49, G.79, A.80, G.81, R.85, E.190, N.191, V.192, G.194, I.195, Y.196, A.198, D.199, P.200, N.201, P.225, L.226, P.227 Chain F: S.16 Ligands: MG.34 12 PLIP interactions: 12 interactions with chain E Hydrogen bonds: E:G.48, E:R.49, E:A.80, E:G.81, E:R.85, E:N.191, E:N.191, E:Y.196, E:Y.196, E:N.201 Salt bridges: E:K.45, E:K.45 ATP.43: 26 residues within 4Å: Chain E: T.19 Chain F: K.42, G.44, G.45, Q.46, S.47, G.77, A.78, G.79, R.83, T.169, K.189, D.190, E.191, G.193, L.194, Y.195, A.197, N.198, P.199, K.200, L.221, D.223, S.224, I.225 Ligands: MOO.45 18 PLIP interactions: 17 interactions with chain F, 1 interactions with chain E Hydrogen bonds: F:G.45, F:Q.46, F:S.47, F:A.78, F:G.79, F:R.83, F:T.169, F:D.190, F:E.191, F:E.191, F:Y.195, F:Y.195, E:T.19 Salt bridges: F:K.42, F:K.42, F:R.83, F:K.189, F:K.189 ATP.46: 23 residues within 4Å: Chain G: K.45, G.47, G.48, R.49, G.79, A.80, G.81, R.85, E.190, N.191, V.192, G.194, I.195, Y.196, A.198, D.199, P.200, N.201, P.225, L.226, P.227 Chain H: S.16 Ligands: MG.47 12 PLIP interactions: 12 interactions with chain G Hydrogen bonds: G:G.48, G:R.49, G:A.80, G:G.81, G:R.85, G:N.191, G:N.191, G:Y.196, G:Y.196, G:N.201 Salt bridges: G:K.45, G:K.45 ATP.58: 26 residues within 4Å: Chain G: T.19 Chain H: K.42, G.44, G.45, Q.46, S.47, G.77, A.78, G.79, R.83, T.169, K.189, D.190, E.191, G.193, L.194, Y.195, A.197, N.198, P.199, K.200, L.221, D.223, S.224, I.225 Ligands: MOO.60 17 PLIP interactions: 17 interactions with chain H Hydrogen bonds: H:G.45, H:Q.46, H:S.47, H:A.78, H:G.79, H:R.83, H:D.190, H:E.191, H:E.191, H:E.191, H:Y.195, H:Y.195 Salt bridges: H:K.42, H:K.42, H:R.83, H:K.189, H:K.189 ATP.63: 23 residues within 4Å: Chain I: K.45, G.47, G.48, R.49, G.79, A.80, G.81, R.85, E.190, N.191, V.192, G.194, I.195, Y.196, A.198, D.199, P.200, N.201, P.225, L.226, P.227 Chain J: S.16 Ligands: MG.64 12 PLIP interactions: 12 interactions with chain I Hydrogen bonds: I:G.48, I:R.49, I:A.80, I:G.81, I:R.85, I:N.191, I:N.191, I:Y.196, I:Y.196, I:N.201 Salt bridges: I:K.45, I:K.45 ATP.73: 26 residues within 4Å: Chain I: T.19 Chain J: K.42, G.44, G.45, Q.46, S.47, G.77, A.78, G.79, R.83, T.169, K.189, D.190, E.191, G.193, L.194, Y.195, A.197, N.198, P.199, K.200, L.221, D.223, S.224, I.225 Ligands: MOO.75 17 PLIP interactions: 17 interactions with chain J Hydrogen bonds: J:G.45, J:Q.46, J:S.47, J:A.78, J:G.79, J:R.83, J:D.190, J:E.191, J:E.191, J:E.191, J:Y.195, J:Y.195 Salt bridges: J:K.42, J:K.42, J:R.83, J:K.189, J:K.189 ATP.78: 23 residues within 4Å: Chain K: K.45, G.47, G.48, R.49, G.79, A.80, G.81, R.85, E.190, N.191, V.192, G.194, I.195, Y.196, A.198, D.199, P.200, N.201, P.225, L.226, P.227 Chain L: S.16 Ligands: MG.79 12 PLIP interactions: 12 interactions with chain K Hydrogen bonds: K:G.48, K:R.49, K:A.80, K:G.81, K:R.85, K:N.191, K:N.191, K:Y.196, K:Y.196, K:N.201 Salt bridges: K:K.45, K:K.45 ATP.88: 26 residues within 4Å: Chain K: T.19 Chain L: K.42, G.44, G.45, Q.46, S.47, G.77, A.78, G.79, R.83, T.169, K.189, D.190, E.191, G.193, L.194, Y.195, A.197, N.198, P.199, K.200, L.221, D.223, S.224, I.225 Ligands: MOO.90 17 PLIP interactions: 17 interactions with chain L Hydrogen bonds: L:G.45, L:Q.46, L:S.47, L:A.78, L:G.79, L:R.83, L:D.190, L:E.191, L:E.191, L:E.191, L:Y.195, L:Y.195 Salt bridges: L:K.42, L:K.42, L:R.83, L:K.189, L:K.189

6 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 5 residues within 4Å: Chain A: K.45, D.171, E.190, P.227 Ligands: ATP.1 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.190, A:P.227 MG.18: 5 residues within 4Å: Chain C: K.45, D.171, E.190, P.227 Ligands: ATP.17 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:E.190, C:P.227 MG.34: 5 residues within 4Å: Chain E: K.45, D.171, E.190, P.227 Ligands: ATP.33 2 PLIP interactions: 2 interactions with chain E Metal complexes: E:E.190, E:P.227 MG.47: 5 residues within 4Å: Chain G: K.45, D.171, E.190, P.227 Ligands: ATP.46 2 PLIP interactions: 2 interactions with chain G Metal complexes: G:E.190, G:P.227 MG.64: 5 residues within 4Å: Chain I: K.45, D.171, E.190, P.227 Ligands: ATP.63 2 PLIP interactions: 2 interactions with chain I Metal complexes: I:E.190, I:P.227 MG.79: 5 residues within 4Å: Chain K: K.45, D.171, E.190, P.227 Ligands: ATP.78 2 PLIP interactions: 2 interactions with chain K Metal complexes: K:E.190, K:P.227

12 x 8M0: bis(mu4-oxo)-tetrakis(mu3-oxo)-hexakis(mu2-oxo)-hexadecaoxo-octamolybdenum (VI)(Non-covalent)

8M0.3: 16 residues within 4Å: Chain A: P.103, A.106, S.107, G.110, Q.111, H.114, Y.127, E.129, H.130, P.131, S.150, P.153, P.154, H.156 Ligands: MOO.8, 8M0.14 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:A.106, A:G.110, A:Q.111, A:H.114, A:E.129, A:H.130, A:H.130, A:S.150, A:S.150, A:H.156 8M0.14: 20 residues within 4Å: Chain A: Y.155, H.156, H.157, H.158 Chain B: G.127, G.128, A.129, G.130, F.146, S.147, M.149, P.150, P.151, K.153, L.176, F.180 Ligands: 8M0.3, MOO.9, MOO.10, MOO.12 13 PLIP interactions: 7 interactions with chain B, 6 interactions with chain A Hydrogen bonds: B:G.128, B:A.129, B:G.130, B:S.147, B:M.149, B:K.153, B:K.153, A:Y.155, A:H.156, A:H.157, A:H.157, A:H.158, A:H.158 8M0.19: 16 residues within 4Å: Chain C: P.103, A.106, S.107, G.110, Q.111, H.114, Y.127, E.129, H.130, P.131, S.150, P.153, P.154, H.156 Ligands: MOO.11, 8M0.30 10 PLIP interactions: 10 interactions with chain C Hydrogen bonds: C:A.106, C:G.110, C:Q.111, C:H.114, C:E.129, C:H.130, C:H.130, C:S.150, C:S.150, C:H.156 8M0.30: 20 residues within 4Å: Chain C: Y.155, H.156, H.157, H.158 Chain D: G.127, G.128, A.129, G.130, F.146, S.147, M.149, P.150, P.151, K.153, L.176, F.180 Ligands: 8M0.19, MOO.25, MOO.26, MOO.28 13 PLIP interactions: 6 interactions with chain C, 7 interactions with chain D Hydrogen bonds: C:Y.155, C:H.156, C:H.157, C:H.157, C:H.158, C:H.158, D:G.128, D:A.129, D:G.130, D:S.147, D:M.149, D:K.153, D:K.153 8M0.35: 16 residues within 4Å: Chain E: P.103, A.106, S.107, G.110, Q.111, H.114, Y.127, E.129, H.130, P.131, S.150, P.153, P.154, H.156 Ligands: MOO.27, 8M0.44 10 PLIP interactions: 10 interactions with chain E Hydrogen bonds: E:A.106, E:G.110, E:Q.111, E:H.114, E:E.129, E:H.130, E:H.130, E:S.150, E:S.150, E:H.156 8M0.44: 20 residues within 4Å: Chain E: Y.155, H.156, H.157, H.158 Chain F: G.127, G.128, A.129, G.130, F.146, S.147, M.149, P.150, P.151, K.153, L.176, F.180 Ligands: 8M0.35, MOO.40, MOO.41, MOO.42 13 PLIP interactions: 7 interactions with chain F, 6 interactions with chain E Hydrogen bonds: F:G.128, F:A.129, F:G.130, F:S.147, F:M.149, F:K.153, F:K.153, E:Y.155, E:H.156, E:H.157, E:H.157, E:H.158, E:H.158 8M0.48: 16 residues within 4Å: Chain G: P.103, A.106, S.107, G.110, Q.111, H.114, Y.127, E.129, H.130, P.131, S.150, P.153, P.154, H.156 Ligands: MOO.52, 8M0.59 11 PLIP interactions: 11 interactions with chain G Hydrogen bonds: G:A.106, G:G.110, G:Q.111, G:H.114, G:Y.127, G:H.130, G:H.130, G:H.130, G:S.150, G:S.150, G:H.156 8M0.59: 20 residues within 4Å: Chain G: Y.155, H.156, H.157, H.158 Chain H: G.127, G.128, A.129, G.130, F.146, S.147, M.149, P.150, P.151, K.153, L.176, F.180 Ligands: 8M0.48, MOO.54, MOO.55, MOO.57 13 PLIP interactions: 6 interactions with chain G, 7 interactions with chain H Hydrogen bonds: G:Y.155, G:H.156, G:H.157, G:H.157, G:H.158, G:H.158, H:G.128, H:A.129, H:G.130, H:S.147, H:M.149, H:K.153, H:K.153 8M0.65: 16 residues within 4Å: Chain I: P.103, A.106, S.107, G.110, Q.111, H.114, Y.127, E.129, H.130, P.131, S.150, P.153, P.154, H.156 Ligands: MOO.69, 8M0.74 11 PLIP interactions: 11 interactions with chain I Hydrogen bonds: I:A.106, I:G.110, I:Q.111, I:H.114, I:Y.127, I:H.130, I:H.130, I:H.130, I:S.150, I:S.150, I:H.156 8M0.74: 20 residues within 4Å: Chain I: Y.155, H.156, H.157, H.158 Chain J: G.127, G.128, A.129, G.130, F.146, S.147, M.149, P.150, P.151, K.153, L.176, F.180 Ligands: 8M0.65, MOO.70, MOO.71, MOO.72 13 PLIP interactions: 6 interactions with chain I, 7 interactions with chain J Hydrogen bonds: I:Y.155, I:H.156, I:H.157, I:H.157, I:H.158, I:H.158, J:G.128, J:A.129, J:G.130, J:S.147, J:M.149, J:K.153, J:K.153 8M0.80: 16 residues within 4Å: Chain K: P.103, A.106, S.107, G.110, Q.111, H.114, Y.127, E.129, H.130, P.131, S.150, P.153, P.154, H.156 Ligands: MOO.56, 8M0.89 11 PLIP interactions: 11 interactions with chain K Hydrogen bonds: K:A.106, K:G.110, K:Q.111, K:H.114, K:Y.127, K:H.130, K:H.130, K:H.130, K:S.150, K:S.150, K:H.156 8M0.89: 20 residues within 4Å: Chain K: Y.155, H.156, H.157, H.158 Chain L: G.127, G.128, A.129, G.130, F.146, S.147, M.149, P.150, P.151, K.153, L.176, F.180 Ligands: 8M0.80, MOO.85, MOO.86, MOO.87 13 PLIP interactions: 7 interactions with chain L, 6 interactions with chain K Hydrogen bonds: L:G.128, L:A.129, L:G.130, L:S.147, L:M.149, L:K.153, L:K.153, K:Y.155, K:H.156, K:H.157, K:H.157, K:H.158, K:H.158

12 x J8E: oxidanyl-[[2,2,4,4,4-pentakis($l^{1}-oxidanyl)-1-(oxidanylmolybdenio)-1$l^{3},3-dioxa-2$l^{5},4$l^{5}-dimolybdacyclobut-2-yl]oxy]molybdenum(Non-covalent)

J8E.4: 11 residues within 4Å: Chain A: E.129, P.131, T.132 Chain E: P.131, T.132, Q.136 Ligands: OMO.7, J8E.20, OMO.23, OMO.32, J8E.36 3 PLIP interactions: 1 interactions with chain E, 2 interactions with chain A Hydrogen bonds: E:Q.136, A:E.129, A:E.129 J8E.16: 13 residues within 4Å: Chain B: L.131, S.132, A.133, V.134, P.135 Chain D: V.134 Chain F: P.124, V.126, S.132, V.134, P.135 Ligands: J8E.24, J8E.39 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain F Hydrogen bonds: B:S.132, B:A.133, B:V.134, F:S.132 J8E.20: 11 residues within 4Å: Chain A: P.131, T.132, Q.136 Chain C: E.129, P.131, T.132 Ligands: J8E.4, OMO.7, OMO.23, OMO.32, J8E.36 3 PLIP interactions: 2 interactions with chain C, 1 interactions with chain A Hydrogen bonds: C:E.129, C:E.129, A:Q.136 J8E.24: 13 residues within 4Å: Chain B: P.124, V.126, S.132, V.134, P.135 Chain D: L.131, S.132, A.133, V.134, P.135 Chain F: V.134 Ligands: J8E.16, J8E.39 5 PLIP interactions: 4 interactions with chain D, 1 interactions with chain B Hydrogen bonds: D:S.132, D:S.132, D:A.133, D:V.134, B:S.132 J8E.36: 11 residues within 4Å: Chain C: P.131, T.132, Q.136 Chain E: E.129, P.131, T.132 Ligands: J8E.4, OMO.7, J8E.20, OMO.23, OMO.32 3 PLIP interactions: 1 interactions with chain C, 2 interactions with chain E Hydrogen bonds: C:Q.136, E:E.129, E:E.129 J8E.39: 13 residues within 4Å: Chain B: V.134 Chain D: P.124, V.126, S.132, V.134, P.135 Chain F: L.131, S.132, A.133, V.134, P.135 Ligands: J8E.16, J8E.24 5 PLIP interactions: 1 interactions with chain D, 4 interactions with chain F Hydrogen bonds: D:S.132, F:S.132, F:S.132, F:A.133, F:V.134 J8E.49: 11 residues within 4Å: Chain G: E.129, P.131, T.132 Chain I: P.131, T.132, Q.136 Ligands: OMO.53, OMO.62, J8E.66, OMO.77, J8E.81 6 PLIP interactions: 4 interactions with chain G, 2 interactions with chain I Hydrogen bonds: G:E.129, G:E.129, G:E.129, G:T.132, I:T.132, I:Q.136 J8E.61: 13 residues within 4Å: Chain H: L.131, S.132, A.133, V.134, P.135 Chain J: P.124, V.126, S.132, V.134, P.135 Chain L: V.134 Ligands: J8E.76, J8E.84 5 PLIP interactions: 1 interactions with chain J, 4 interactions with chain H Hydrogen bonds: J:S.132, H:S.132, H:S.132, H:A.133, H:V.134 J8E.66: 11 residues within 4Å: Chain I: E.129, P.131, T.132 Chain K: P.131, T.132, Q.136 Ligands: J8E.49, OMO.53, OMO.62, OMO.77, J8E.81 6 PLIP interactions: 2 interactions with chain K, 4 interactions with chain I Hydrogen bonds: K:T.132, K:Q.136, I:E.129, I:E.129, I:E.129, I:T.132 J8E.76: 13 residues within 4Å: Chain H: V.134 Chain J: L.131, S.132, A.133, V.134, P.135 Chain L: P.124, V.126, S.132, V.134, P.135 Ligands: J8E.61, J8E.84 5 PLIP interactions: 4 interactions with chain J, 1 interactions with chain L Hydrogen bonds: J:S.132, J:S.132, J:A.133, J:V.134, L:S.132 J8E.81: 11 residues within 4Å: Chain G: P.131, T.132, Q.136 Chain K: E.129, P.131, T.132 Ligands: J8E.49, OMO.53, OMO.62, J8E.66, OMO.77 6 PLIP interactions: 4 interactions with chain K, 2 interactions with chain G Hydrogen bonds: K:E.129, K:E.129, K:E.129, K:T.132, G:T.132, G:Q.136 J8E.84: 13 residues within 4Å: Chain H: P.124, V.126, S.132, V.134, P.135 Chain J: V.134 Chain L: L.131, S.132, A.133, V.134, P.135 Ligands: J8E.61, J8E.76 4 PLIP interactions: 3 interactions with chain L, 1 interactions with chain H Hydrogen bonds: L:S.132, L:A.133, L:V.134, H:S.132

42 x MOO: MOLYBDATE ION(Non-covalent)(Non-functional Binders)

MOO.5: 6 residues within 4Å: Chain A: P.131, D.135 Chain B: K.153 Ligands: MOO.6, MOO.10, MOO.11 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:D.135, B:K.153, B:K.153 MOO.6: 7 residues within 4Å: Chain A: D.135 Chain B: Q.101, K.153 Ligands: MOO.5, MOO.10, MOO.11, MOO.12 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Q.101, B:Q.101, B:K.153 MOO.8: 6 residues within 4Å: Chain F: K.153 Ligands: 8M0.3, MOO.37, MOO.38, MOO.41, MOO.42 1 PLIP interactions: 1 interactions with chain F Hydrogen bonds: F:K.153 MOO.9: 6 residues within 4Å: Chain B: S.104, D.108, S.147, M.149 Ligands: MOO.12, 8M0.14 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:S.104, B:S.104, B:S.147 MOO.10: 5 residues within 4Å: Ligands: MOO.5, MOO.6, MOO.11, MOO.12, 8M0.14 No protein-ligand interaction detected (PLIP) MOO.11: 6 residues within 4Å: Chain B: K.153 Ligands: MOO.5, MOO.6, MOO.10, MOO.12, 8M0.19 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:K.153 MOO.12: 8 residues within 4Å: Chain B: S.104, D.108, K.153 Ligands: MOO.6, MOO.9, MOO.10, MOO.11, 8M0.14 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:D.108, B:K.153 MOO.15: 7 residues within 4Å: Chain B: A.78, G.79, A.82, R.83, R.168, T.169 Ligands: ATP.13 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:G.79, B:R.83, B:R.83, B:T.169, B:T.169, B:T.169 MOO.21: 6 residues within 4Å: Chain C: P.131, D.135 Chain D: K.153 Ligands: MOO.22, MOO.26, MOO.27 3 PLIP interactions: 1 interactions with chain C, 2 interactions with chain D Hydrogen bonds: C:D.135, D:K.153, D:K.153 MOO.22: 7 residues within 4Å: Chain C: D.135 Chain D: Q.101, K.153 Ligands: MOO.21, MOO.26, MOO.27, MOO.28 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:Q.101, D:Q.101, D:K.153 MOO.25: 6 residues within 4Å: Chain D: S.104, D.108, S.147, M.149 Ligands: MOO.28, 8M0.30 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:S.104, D:S.104, D:S.147 MOO.26: 5 residues within 4Å: Ligands: MOO.21, MOO.22, MOO.27, MOO.28, 8M0.30 No protein-ligand interaction detected (PLIP) MOO.27: 6 residues within 4Å: Chain D: K.153 Ligands: MOO.21, MOO.22, MOO.26, MOO.28, 8M0.35 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:K.153 MOO.28: 8 residues within 4Å: Chain D: S.104, D.108, K.153 Ligands: MOO.22, MOO.25, MOO.26, MOO.27, 8M0.30 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:D.108, D:K.153 MOO.31: 7 residues within 4Å: Chain D: A.78, G.79, A.82, R.83, R.168, T.169 Ligands: ATP.29 6 PLIP interactions: 6 interactions with chain D Hydrogen bonds: D:G.79, D:R.83, D:R.83, D:T.169, D:T.169, D:T.169 MOO.37: 6 residues within 4Å: Chain E: P.131, D.135 Chain F: K.153 Ligands: MOO.8, MOO.38, MOO.41 2 PLIP interactions: 1 interactions with chain E, 1 interactions with chain F Hydrogen bonds: E:D.135, F:K.153 MOO.38: 7 residues within 4Å: Chain E: D.135 Chain F: Q.101, K.153 Ligands: MOO.8, MOO.37, MOO.41, MOO.42 2 PLIP interactions: 1 interactions with chain E, 1 interactions with chain F Hydrogen bonds: E:D.135, F:K.153 MOO.40: 6 residues within 4Å: Chain F: S.104, D.108, S.147, M.149 Ligands: MOO.42, 8M0.44 3 PLIP interactions: 3 interactions with chain F Hydrogen bonds: F:S.104, F:S.104, F:S.147 MOO.41: 5 residues within 4Å: Ligands: MOO.8, MOO.37, MOO.38, MOO.42, 8M0.44 No protein-ligand interaction detected (PLIP) MOO.42: 8 residues within 4Å: Chain F: S.104, D.108, K.153 Ligands: MOO.8, MOO.38, MOO.40, MOO.41, 8M0.44 2 PLIP interactions: 2 interactions with chain F Hydrogen bonds: F:D.108, F:K.153 MOO.45: 7 residues within 4Å: Chain F: A.78, G.79, A.82, R.83, R.168, T.169 Ligands: ATP.43 6 PLIP interactions: 6 interactions with chain F Hydrogen bonds: F:G.79, F:R.83, F:R.83, F:T.169, F:T.169, F:T.169 MOO.50: 6 residues within 4Å: Chain G: P.131, D.135 Chain H: K.153 Ligands: MOO.51, MOO.55, MOO.56 2 PLIP interactions: 2 interactions with chain H Hydrogen bonds: H:K.153, H:K.153 MOO.51: 7 residues within 4Å: Chain G: D.135 Chain H: Q.101, K.153 Ligands: MOO.50, MOO.55, MOO.56, MOO.57 3 PLIP interactions: 3 interactions with chain H Hydrogen bonds: H:Q.101, H:Q.101, H:K.153 MOO.52: 6 residues within 4Å: Chain J: K.153 Ligands: 8M0.48, MOO.67, MOO.68, MOO.71, MOO.72 1 PLIP interactions: 1 interactions with chain J Hydrogen bonds: J:K.153 MOO.54: 6 residues within 4Å: Chain H: S.104, D.108, S.147, M.149 Ligands: MOO.57, 8M0.59 3 PLIP interactions: 3 interactions with chain H Hydrogen bonds: H:S.104, H:S.104, H:S.147 MOO.55: 5 residues within 4Å: Ligands: MOO.50, MOO.51, MOO.56, MOO.57, 8M0.59 No protein-ligand interaction detected (PLIP) MOO.56: 6 residues within 4Å: Chain H: K.153 Ligands: MOO.50, MOO.51, MOO.55, MOO.57, 8M0.80 1 PLIP interactions: 1 interactions with chain H Hydrogen bonds: H:K.153 MOO.57: 8 residues within 4Å: Chain H: S.104, D.108, K.153 Ligands: MOO.51, MOO.54, MOO.55, MOO.56, 8M0.59 3 PLIP interactions: 3 interactions with chain H Hydrogen bonds: H:D.108, H:D.108, H:K.153 MOO.60: 7 residues within 4Å: Chain H: A.78, G.79, A.82, R.83, R.168, T.169 Ligands: ATP.58 6 PLIP interactions: 6 interactions with chain H Hydrogen bonds: H:G.79, H:R.83, H:R.83, H:R.168, H:T.169, H:T.169 MOO.67: 6 residues within 4Å: Chain I: P.131, D.135 Chain J: K.153 Ligands: MOO.52, MOO.68, MOO.71 1 PLIP interactions: 1 interactions with chain J Hydrogen bonds: J:K.153 MOO.68: 7 residues within 4Å: Chain I: D.135 Chain J: Q.101, K.153 Ligands: MOO.52, MOO.67, MOO.71, MOO.72 2 PLIP interactions: 1 interactions with chain J, 1 interactions with chain I Hydrogen bonds: J:K.153, I:D.135 MOO.69: 6 residues within 4Å: Chain L: K.153 Ligands: 8M0.65, MOO.82, MOO.83, MOO.86, MOO.87 1 PLIP interactions: 1 interactions with chain L Hydrogen bonds: L:K.153 MOO.70: 6 residues within 4Å: Chain J: S.104, D.108, S.147, M.149 Ligands: MOO.72, 8M0.74 3 PLIP interactions: 3 interactions with chain J Hydrogen bonds: J:S.104, J:S.104, J:S.147 MOO.71: 5 residues within 4Å: Ligands: MOO.52, MOO.67, MOO.68, MOO.72, 8M0.74 No protein-ligand interaction detected (PLIP) MOO.72: 8 residues within 4Å: Chain J: S.104, D.108, K.153 Ligands: MOO.52, MOO.68, MOO.70, MOO.71, 8M0.74 3 PLIP interactions: 3 interactions with chain J Hydrogen bonds: J:D.108, J:D.108, J:K.153 MOO.75: 7 residues within 4Å: Chain J: A.78, G.79, A.82, R.83, R.168, T.169 Ligands: ATP.73 5 PLIP interactions: 5 interactions with chain J Hydrogen bonds: J:G.79, J:R.83, J:R.83, J:T.169, J:T.169 MOO.82: 6 residues within 4Å: Chain K: P.131, D.135 Chain L: K.153 Ligands: MOO.69, MOO.83, MOO.86 1 PLIP interactions: 1 interactions with chain L Hydrogen bonds: L:K.153 MOO.83: 7 residues within 4Å: Chain K: D.135 Chain L: Q.101, K.153 Ligands: MOO.69, MOO.82, MOO.86, MOO.87 2 PLIP interactions: 1 interactions with chain L, 1 interactions with chain K Hydrogen bonds: L:K.153, K:D.135 MOO.85: 6 residues within 4Å: Chain L: S.104, D.108, S.147, M.149 Ligands: MOO.87, 8M0.89 3 PLIP interactions: 3 interactions with chain L Hydrogen bonds: L:S.104, L:S.104, L:S.147 MOO.86: 5 residues within 4Å: Ligands: MOO.69, MOO.82, MOO.83, MOO.87, 8M0.89 No protein-ligand interaction detected (PLIP) MOO.87: 8 residues within 4Å: Chain L: S.104, D.108, K.153 Ligands: MOO.69, MOO.83, MOO.85, MOO.86, 8M0.89 3 PLIP interactions: 3 interactions with chain L Hydrogen bonds: L:D.108, L:D.108, L:K.153 MOO.90: 7 residues within 4Å: Chain L: A.78, G.79, A.82, R.83, R.168, T.169 Ligands: ATP.88 5 PLIP interactions: 5 interactions with chain L Hydrogen bonds: L:G.79, L:R.83, L:R.83, L:T.169, L:T.169

6 x OMO: MO(VI)(=O)(OH)2 CLUSTER(Non-covalent)

OMO.7: 12 residues within 4Å: Chain A: Q.136, I.139, H.140 Chain C: T.132, Q.136, H.140 Chain E: H.140 Ligands: J8E.4, J8E.20, OMO.23, OMO.32, J8E.36 4 PLIP interactions: 1 interactions with chain C, 3 interactions with chain A Hydrogen bonds: C:T.132, A:Q.136, A:Q.136, A:H.140 OMO.23: 12 residues within 4Å: Chain A: H.140 Chain C: Q.136, I.139, H.140 Chain E: T.132, Q.136, H.140 Ligands: J8E.4, OMO.7, J8E.20, OMO.32, J8E.36 4 PLIP interactions: 1 interactions with chain E, 3 interactions with chain C Hydrogen bonds: E:T.132, C:Q.136, C:Q.136, C:H.140 OMO.32: 12 residues within 4Å: Chain A: T.132, Q.136, H.140 Chain C: H.140 Chain E: Q.136, I.139, H.140 Ligands: J8E.4, OMO.7, J8E.20, OMO.23, J8E.36 4 PLIP interactions: 3 interactions with chain E, 1 interactions with chain A Hydrogen bonds: E:Q.136, E:Q.136, E:H.140, A:T.132 OMO.53: 12 residues within 4Å: Chain G: Q.136, I.139, H.140 Chain I: H.140 Chain K: T.132, Q.136, H.140 Ligands: J8E.49, OMO.62, J8E.66, OMO.77, J8E.81 3 PLIP interactions: 3 interactions with chain G Hydrogen bonds: G:Q.136, G:Q.136, G:H.140 OMO.62: 12 residues within 4Å: Chain G: T.132, Q.136, H.140 Chain I: Q.136, I.139, H.140 Chain K: H.140 Ligands: J8E.49, OMO.53, J8E.66, OMO.77, J8E.81 3 PLIP interactions: 3 interactions with chain I Hydrogen bonds: I:Q.136, I:Q.136, I:H.140 OMO.77: 12 residues within 4Å: Chain G: H.140 Chain I: T.132, Q.136, H.140 Chain K: Q.136, I.139, H.140 Ligands: J8E.49, OMO.53, OMO.62, J8E.66, J8E.81 3 PLIP interactions: 3 interactions with chain K Hydrogen bonds: K:Q.136, K:Q.136, K:H.140

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Brunle, S. et al., Molybdate pumping into the molybdenum storage protein via an ATP-powered piercing mechanism. Proc.Natl.Acad.Sci.USA (2019)

Release Date

2019-12-18

Peptides

Molybdenum storage protein subunit alpha: ACEGIK
Molybdenum storage protein subunit beta: BDFHJL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

E
E

G
G

I
I

K
K

B
B

D
D

F
F

H
H

J
J

L
L

Molybdenum storage protein subunit alpha

Molybdenum storage protein subunit beta

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