SMTL ID : 6rks.1

E. coli DNA Gyrase - DNA binding and cleavage domain in State 1 without TOPRIM insertion

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-mer

Ligands

1 x JHN: (3~{R})-3-[[4-(3,4-dihydro-2~{H}-pyrano[2,3-c]pyridin-6-ylmethylamino)piperidin-1-yl]methyl]-1,4,7-triazatricyclo[6.3.1.0^{4,12}]dodeca-6,8(12),9-triene-5,11-dione(Non-covalent)

JHN.1: 10 residues within 4Å: Chain A: G.71, D.82, M.120 Chain C: A.67, D.82, M.120 Chain G: T.2, A.3 Chain H: T.2, A.3 1 PLIP interactions: 1 interactions with chain C Hydrophobic interactions: C:A.67

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vanden Broeck, A. et al., Cryo-EM structure of the complete E. coli DNA gyrase nucleoprotein complex. Nat Commun (2019)

Release Date

2019-11-06

Peptides

DNA gyrase subunit A: AC
DNA gyrase subunit B: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

B
B

D
D

DNA gyrase subunit A

DNA gyrase subunit B

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