SMTL ID : 6rlo.3 (3 other biounits)

Crystal structure of AT1412dm Fab fragment in complex with CD9 large extracellular loop

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 4 residues within 4Å: Chain A: E.46, W.47 Chain B: T.103, F.104 Ligand excluded by PLIP

1 x NA: SODIUM ION(Non-functional Binders)

NA.2: 4 residues within 4Å: Chain A: F.129 Chain B: P.126, S.127, Q.130 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.127, B:Q.130

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Neviani, V. et al., Structural basis of a homo-dimerization site in tetraspanin CD9 targeted by a melanoma patient-derived antibody. To Be Published

Release Date

2021-05-12

Peptides

AT1412dm Fab Fragment (Heavy Chain): A
AT1412dm Fab Fragment (Light Chain): B
CD9 antigen: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
F

C
K

AT1412dm Fab Fragment (Heavy Chain)

AT1412dm Fab Fragment (Light Chain)

CD9 antigen

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