SMTL ID : 6rlp.1

Cryo-EM reconstruction of TMV coat protein

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-24-mer

Ligands

24 x G- A- A: RNA (5'-R(P*GP*AP*A)-3')(Non-covalent)

G-A-A.1: 15 residues within 4Å: Chain A: Q.36, A.86, T.89, R.112, D.115, D.116, A.117, V.119, A.120, S.123 Chain K: G.85, D.88, T.89 Ligands: G-A-A.7, G-A-A.11 Protein-ligand interaction information (PLIP) not available G-A-A.2: 23 residues within 4Å: Chain B: Q.36, A.86, T.89, R.112, D.115, D.116, A.117, V.119, A.120, S.123 Chain F: G.85, D.88, T.89 Chain H: Q.38, R.90, R.92 Chain O: Q.34, T.37, Q.38, Q.39, E.95 Ligands: G-A-A.6, G-A-A.10 Protein-ligand interaction information (PLIP) not available G-A-A.3: 22 residues within 4Å: Chain C: Q.36, A.86, T.89, R.112, D.115, D.116, A.117, V.119, A.120, S.123 Chain I: Q.38, R.90, R.92 Chain N: Q.34, T.37, Q.38, Q.39, E.95 Chain T: G.85, D.88, T.89 Ligands: G-A-A.20 Protein-ligand interaction information (PLIP) not available G-A-A.4: 15 residues within 4Å: Chain D: Q.36, A.86, T.89, R.112, D.115, D.116, A.117, V.119, A.120, S.123 Chain U: G.85, D.88, T.89 Ligands: G-A-A.11, G-A-A.21 Protein-ligand interaction information (PLIP) not available G-A-A.5: 11 residues within 4Å: Chain E: Q.36, A.86, T.89, R.112, D.115, D.116, A.117, V.119, A.120, S.123 Ligands: G-A-A.22 Protein-ligand interaction information (PLIP) not available G-A-A.6: 23 residues within 4Å: Chain F: Q.36, A.86, T.89, R.112, D.115, D.116, A.117, V.119, A.120, S.123 Chain H: Q.34, T.37, Q.38, Q.39, E.95 Chain V: Q.38, R.90, R.92 Chain X: G.85, D.88, T.89 Ligands: G-A-A.2, G-A-A.24 Protein-ligand interaction information (PLIP) not available G-A-A.7: 15 residues within 4Å: Chain A: G.85, D.88, T.89 Chain G: Q.36, A.86, T.89, R.112, D.115, D.116, A.117, V.119, A.120, S.123 Ligands: G-A-A.1, G-A-A.13 Protein-ligand interaction information (PLIP) not available G-A-A.8: 15 residues within 4Å: Chain H: Q.36, A.86, T.89, R.112, D.115, D.116, A.117, V.119, A.120, S.123 Chain V: G.85, D.88, T.89 Ligands: G-A-A.15, G-A-A.22 Protein-ligand interaction information (PLIP) not available G-A-A.9: 15 residues within 4Å: Chain I: Q.36, A.86, T.89, R.112, D.115, D.116, A.117, V.119, A.120, S.123 Chain W: G.85, D.88, T.89 Ligands: G-A-A.14, G-A-A.23 Protein-ligand interaction information (PLIP) not available G-A-A.10: 23 residues within 4Å: Chain B: G.85, D.88, T.89 Chain J: Q.36, A.86, T.89, R.112, D.115, D.116, A.117, V.119, A.120, S.123 Chain O: Q.38, R.90, R.92 Chain S: Q.34, T.37, Q.38, Q.39, E.95 Ligands: G-A-A.2, G-A-A.16 Protein-ligand interaction information (PLIP) not available G-A-A.11: 15 residues within 4Å: Chain D: G.85, D.88, T.89 Chain K: Q.36, A.86, T.89, R.112, D.115, D.116, A.117, V.119, A.120, S.123 Ligands: G-A-A.1, G-A-A.4 Protein-ligand interaction information (PLIP) not available G-A-A.12: 15 residues within 4Å: Chain L: Q.36, A.86, T.89, R.112, D.115, D.116, A.117, V.119, A.120, S.123 Chain N: G.85, D.88, T.89 Ligands: G-A-A.14, G-A-A.17 Protein-ligand interaction information (PLIP) not available G-A-A.13: 15 residues within 4Å: Chain G: G.85, D.88, T.89 Chain M: Q.36, A.86, T.89, R.112, D.115, D.116, A.117, V.119, A.120, S.123 Ligands: G-A-A.7, G-A-A.18 Protein-ligand interaction information (PLIP) not available G-A-A.14: 15 residues within 4Å: Chain I: G.85, D.88, T.89 Chain N: Q.36, A.86, T.89, R.112, D.115, D.116, A.117, V.119, A.120, S.123 Ligands: G-A-A.9, G-A-A.12 Protein-ligand interaction information (PLIP) not available G-A-A.15: 15 residues within 4Å: Chain H: G.85, D.88, T.89 Chain O: Q.36, A.86, T.89, R.112, D.115, D.116, A.117, V.119, A.120, S.123 Ligands: G-A-A.8, G-A-A.19 Protein-ligand interaction information (PLIP) not available G-A-A.16: 23 residues within 4Å: Chain J: G.85, D.88, T.89 Chain P: Q.36, A.86, T.89, R.112, D.115, D.116, A.117, V.119, A.120, S.123 Chain S: Q.38, R.90, R.92 Chain W: Q.34, T.37, Q.38, Q.39, E.95 Ligands: G-A-A.10, G-A-A.20 Protein-ligand interaction information (PLIP) not available G-A-A.17: 15 residues within 4Å: Chain L: G.85, D.88, T.89 Chain Q: Q.36, A.86, T.89, R.112, D.115, D.116, A.117, V.119, A.120, S.123 Ligands: G-A-A.12, G-A-A.21 Protein-ligand interaction information (PLIP) not available G-A-A.18: 20 residues within 4Å: Chain E: Q.34, T.37, Q.38, Q.39, E.95 Chain M: G.85, D.88, T.89 Chain R: Q.36, A.86, T.89, R.112, D.115, D.116, A.117, V.119, A.120, S.123 Ligands: G-A-A.13, G-A-A.24 Protein-ligand interaction information (PLIP) not available G-A-A.19: 15 residues within 4Å: Chain O: G.85, D.88, T.89 Chain S: Q.36, A.86, T.89, R.112, D.115, D.116, A.117, V.119, A.120, S.123 Ligands: G-A-A.15, G-A-A.23 Protein-ligand interaction information (PLIP) not available G-A-A.20: 23 residues within 4Å: Chain I: Q.34, T.37, Q.38, Q.39, E.95 Chain P: G.85, D.88, T.89 Chain T: Q.36, A.86, T.89, R.112, D.115, D.116, A.117, V.119, A.120, S.123 Chain W: Q.38, R.90, R.92 Ligands: G-A-A.3, G-A-A.16 Protein-ligand interaction information (PLIP) not available G-A-A.21: 15 residues within 4Å: Chain Q: G.85, D.88, T.89 Chain U: Q.36, A.86, T.89, R.112, D.115, D.116, A.117, V.119, A.120, S.123 Ligands: G-A-A.4, G-A-A.17 Protein-ligand interaction information (PLIP) not available G-A-A.22: 15 residues within 4Å: Chain E: G.85, D.88, T.89 Chain V: Q.36, A.86, T.89, R.112, D.115, D.116, A.117, V.119, A.120, S.123 Ligands: G-A-A.5, G-A-A.8 Protein-ligand interaction information (PLIP) not available G-A-A.23: 15 residues within 4Å: Chain S: G.85, D.88, T.89 Chain W: Q.36, A.86, T.89, R.112, D.115, D.116, A.117, V.119, A.120, S.123 Ligands: G-A-A.9, G-A-A.19 Protein-ligand interaction information (PLIP) not available G-A-A.24: 23 residues within 4Å: Chain E: Q.38, R.90, R.92 Chain R: G.85, D.88, T.89 Chain V: Q.34, T.37, Q.38, Q.39, E.95 Chain X: Q.36, A.86, T.89, R.112, D.115, D.116, A.117, V.119, A.120, S.123 Ligands: G-A-A.6, G-A-A.18 Protein-ligand interaction information (PLIP) not available

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kandiah, E. et al., Cryo-EM reconstruction of TMV coat protein. To Be Published

Release Date

2022-11-23

Peptides

Capsid protein: ABCDEFGHIJKLMNOPQRSTUVWX

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

M
M

N
N

O
O

P
P

Q
Q

R
S

S
T

T
U

U
V

V
W

W
X

X
Y

Capsid protein

Related Entries With Identical Sequence