SMTL ID : 6rmk.1

Bacteriorhodopsin, dark state, cell 2, refined using the same protocol as sub-ps time delays

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-trimer

Ligands

3 x RET: RETINAL(Covalent)

RET.1: 16 residues within 4Å: Chain A: Y.80, W.83, T.86, T.87, M.115, W.135, S.138, T.139, M.142, W.179, Y.182, P.183, W.186, D.209, A.212, K.213 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:Y.80, A:W.83, A:T.87, A:M.142, A:W.179, A:W.179, A:Y.182, A:Y.182, A:Y.182, A:Y.182, A:P.183, A:W.186, A:W.186, A:A.212, A:K.213 RET.2: 16 residues within 4Å: Chain B: Y.80, W.83, T.86, T.87, M.115, W.135, S.138, T.139, M.142, W.179, Y.182, P.183, W.186, D.209, A.212, K.213 15 PLIP interactions: 15 interactions with chain B Hydrophobic interactions: B:Y.80, B:W.83, B:T.87, B:M.142, B:W.179, B:W.179, B:Y.182, B:Y.182, B:Y.182, B:Y.182, B:P.183, B:W.186, B:W.186, B:A.212, B:K.213 RET.3: 16 residues within 4Å: Chain C: Y.80, W.83, T.86, T.87, M.115, W.135, S.138, T.139, M.142, W.179, Y.182, P.183, W.186, D.209, A.212, K.213 15 PLIP interactions: 15 interactions with chain C Hydrophobic interactions: C:Y.80, C:W.83, C:T.87, C:M.142, C:W.179, C:W.179, C:Y.182, C:Y.182, C:Y.182, C:Y.182, C:P.183, C:W.186, C:W.186, C:A.212, C:K.213

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nass Kovacs, G. et al., Three-dimensional view of ultrafast dynamics in photoexcited bacteriorhodopsin. Nat Commun (2019)

Release Date

2019-06-05

Peptides

Bacteriorhodopsin: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

Membrane

We predict this structure to be a membrane protein.
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Bacteriorhodopsin