SMTL ID : 6rmr.1

Crystal structure of Escherichia coli periplasmic glucose-1-phosphatase H18D mutant

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-dimer

Ligands

1 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)

1PE.1: 7 residues within 4Å: Chain A: R.94, M.123, E.196, H.289, D.290, S.291 Ligands: ACT.7 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.291

16 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 6 residues within 4Å: Chain A: I.103, T.104, C.110, I.112 Chain B: Q.100 Ligands: ACT.11 Ligand excluded by PLIP ACT.3: 4 residues within 4Å: Chain A: C.79, P.80, C.110, D.111 Ligand excluded by PLIP ACT.4: 5 residues within 4Å: Chain A: Q.48, L.92, Q.93, M.120, G.121 Ligand excluded by PLIP ACT.5: 3 residues within 4Å: Chain A: L.297, T.298, F.302 Ligand excluded by PLIP ACT.6: 4 residues within 4Å: Chain A: Y.168, L.182, G.201, P.202 Ligand excluded by PLIP ACT.7: 7 residues within 4Å: Chain A: R.17, D.18, R.21, R.94, H.289, D.290 Ligands: 1PE.1 Ligand excluded by PLIP ACT.8: 3 residues within 4Å: Chain A: L.9, Q.10, M.73 Ligand excluded by PLIP ACT.10: 5 residues within 4Å: Chain B: T.214, Y.218, W.237, N.311, A.344 Ligand excluded by PLIP ACT.11: 6 residues within 4Å: Chain A: Q.100, T.104 Chain B: T.104, C.110, I.112 Ligands: ACT.2 Ligand excluded by PLIP ACT.12: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP ACT.13: 3 residues within 4Å: Chain B: E.163, N.167, K.169 Ligand excluded by PLIP ACT.14: 4 residues within 4Å: Chain B: D.380, D.383, S.384, N.387 Ligand excluded by PLIP ACT.15: 4 residues within 4Å: Chain B: D.18, R.94, H.289, D.290 Ligand excluded by PLIP ACT.16: 4 residues within 4Å: Chain B: Y.86, Y.88, H.116, Q.117 Ligand excluded by PLIP ACT.17: 4 residues within 4Å: Chain B: Q.48, L.92, Q.93, G.121 Ligand excluded by PLIP ACT.18: 5 residues within 4Å: Chain A: S.76, G.77, P.108 Chain B: V.44, Q.48 Ligand excluded by PLIP

1 x ZN: ZINC ION(Non-covalent)

ZN.9: 4 residues within 4Å: Chain A: D.270, T.275, D.383, N.387 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.270, A:D.270, A:D.383

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.19: 3 residues within 4Å: Chain B: M.123, E.196, S.291 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.291, B:S.291 EDO.20: 1 residues within 4Å: Chain B: E.219 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pfeiffer, P. et al., Crystal structure of Escherichia coli periplasmic glucose-1-phosphatase H18D mutant. To Be Published

Release Date

2020-05-13

Peptides

Glucose-1-phosphatase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Glucose-1-phosphatase