SMTL ID : 6ro1.1

X-ray crystal structure of the MTR4 NVL complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.07 Å

Oligo State

hetero-1-1-mer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: H.387, G.388, G.389, T.413, T.415 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.388, A:T.413, A:T.413, A:T.415 SO4.2: 4 residues within 4Å: Chain A: S.326, K.327, K.328, F.920 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.326, A:S.326, A:K.327, A:K.328 SO4.3: 5 residues within 4Å: Chain A: T.497, Y.498, R.785, D.815, E.816 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.498, A:E.816 Salt bridges: A:R.785 SO4.4: 5 residues within 4Å: Chain A: K.592, W.602, Q.698, G.704, I.705 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:W.602, A:I.705 Salt bridges: A:K.592 SO4.5: 3 residues within 4Å: Chain A: I.122, K.123, A.124 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.123 Salt bridges: A:K.123 SO4.8: 4 residues within 4Å: Chain A: Q.586, R.674 Chain B: D.15, S.19 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:Q.586, B:S.19, B:S.19 Salt bridges: A:R.674

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.6: 15 residues within 4Å: Chain A: F.69, I.70, L.71, D.72, Q.75, H.93, T.94, S.95, A.96, G.97, K.98, T.99, V.100, N.421, R.458 19 PLIP interactions: 19 interactions with chain A Hydrogen bonds: A:D.72, A:Q.75, A:Q.75, A:H.93, A:S.95, A:S.95, A:A.96, A:G.97, A:K.98, A:T.99, A:T.99, A:N.421, A:R.458, A:R.458 Salt bridges: A:K.98 pi-Stacking: A:F.69, A:F.69 pi-Cation interactions: A:R.458, A:R.458

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.7: 2 residues within 4Å: Chain A: P.58, R.59 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lingaraju, M. et al., The MTR4 helicase recruits nuclear adaptors of the human RNA exosome using distinct arch-interacting motifs. Nat Commun (2019)

Release Date

2019-07-03

Peptides

Exosome RNA helicase MTR4: A
Nuclear valosin-containing protein-like: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Exosome RNA helicase MTR4

Nuclear valosin-containing protein-like