SMTL ID : 6roj.1

Cryo-EM structure of the activated Drs2p-Cdc50p

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-mer

Ligands

2 x NAG- NAG- BMA- BMA: beta-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-BMA.1: 9 residues within 4Å: Chain B: D.214, Y.215, N.216, L.217, T.218, N.288, A.291 Ligands: NAG-NAG.2, NAG-NAG.2 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.216 NAG-NAG-BMA-BMA.3: 9 residues within 4Å: Chain B: N.199, P.245, N.246, K.249, K.250, N.305, Y.306, P.307, L.310 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:P.307, B:L.310 Hydrogen bonds: B:N.246, B:K.249

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.2: 4 residues within 4Å: Chain B: V.205, D.214, N.216 Ligands: NAG-NAG-BMA-BMA.1 No protein-ligand interaction detected (PLIP)

1 x MG: MAGNESIUM ION(Non-covalent)

MG.4: 4 residues within 4Å: Chain A: D.560, T.562, T.564, D.954 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:T.562, A:D.954, H2O.1, H2O.1

1 x 2Y5: (2R)-1-{[(R)-hydroxy{[(1R,2R,3R,4R,5S,6R)-2,3,5,6-tetrahydroxy-4-(phosphonooxy)cyclohexyl]oxy}phosphoryl]oxy}-3-(octadecanoyloxy)propan-2-yl (5Z,8Z,11Z,14Z)-icosa-5,8,11,14-tetraenoate(Non-covalent)

2Y5.5: 16 residues within 4Å: Chain A: V.457, L.458, W.1028, Y.1092, W.1095, G.1096, I.1099, F.1103, I.1110, R.1219, D.1220, W.1223, K.1224, K.1227, Y.1235, H.1236 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:V.457, A:L.458, A:W.1028, A:Y.1092, A:Y.1092, A:W.1095, A:W.1095, A:W.1095, A:I.1099, A:F.1103, A:F.1103 Hydrogen bonds: A:D.1220, A:W.1223, A:Y.1235 Salt bridges: A:K.1149, A:R.1219, A:R.1219, A:K.1224, A:H.1236

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Timcenko, M. et al., Structure and autoregulation of a P4-ATPase lipid flippase. Nature (2019)

Release Date

2019-07-03

Peptides

Probable phospholipid-transporting ATPase DRS2,Oxaloacetate decarboxylase alpha chain: A
Cell division control protein 50: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Membrane

We predict this structure to be a membrane protein.
Show / Hide

Probable phospholipid-transporting ATPase DRS2,Oxaloacetate decarboxylase alpha chain

Cell division control protein 50

Related Entries With Identical Sequence