SMTL ID : 6rph.1

TR-SMX open state structure (10-15ms) of bacteriorhodopsin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-trimer

Ligands

3 x RET: RETINAL(Covalent)

RET.1: 20 residues within 4Å: Chain A: Y.96, W.99, T.103, L.106, M.131, I.132, G.135, W.151, S.154, T.155, M.158, L.194, W.195, Y.198, P.199, W.202, F.221, D.225, A.228, K.229 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:Y.96, A:W.99, A:W.99, A:T.103, A:I.132, A:W.195, A:W.195, A:Y.198, A:Y.198, A:Y.198, A:Y.198, A:P.199, A:W.202, A:A.228, A:K.229 RET.2: 20 residues within 4Å: Chain B: Y.96, W.99, T.103, L.106, M.131, I.132, G.135, W.151, S.154, T.155, M.158, L.194, W.195, Y.198, P.199, W.202, F.221, D.225, A.228, K.229 15 PLIP interactions: 15 interactions with chain B Hydrophobic interactions: B:Y.96, B:W.99, B:W.99, B:T.103, B:I.132, B:W.195, B:W.195, B:Y.198, B:Y.198, B:Y.198, B:Y.198, B:P.199, B:W.202, B:A.228, B:K.229 RET.3: 20 residues within 4Å: Chain C: Y.96, W.99, T.103, L.106, M.131, I.132, G.135, W.151, S.154, T.155, M.158, L.194, W.195, Y.198, P.199, W.202, F.221, D.225, A.228, K.229 15 PLIP interactions: 15 interactions with chain C Hydrophobic interactions: C:Y.96, C:W.99, C:W.99, C:T.103, C:I.132, C:W.195, C:W.195, C:Y.198, C:Y.198, C:Y.198, C:Y.198, C:P.199, C:W.202, C:A.228, C:K.229

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Weinert, T. et al., Proton uptake mechanism in bacteriorhodopsin captured by serial synchrotron crystallography. Science (2019)

Release Date

2019-07-17

Peptides

Bacteriorhodopsin: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

Membrane

We predict this structure to be a membrane protein.
Show / Hide

Bacteriorhodopsin