SMTL ID : 6rqk.1 (1 other biounit)

Crystal structure of GH125 1,6-alpha-mannosidase from Clostridium perfringens in complex with mannoimidazole

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

2 x MVL: (5R,6R,7S,8R)-5-(HYDROXYMETHYL)-5,6,7,8-TETRAHYDROIMIDAZO[1,2-A]PYRIDINE-6,7,8-TRIOL(Non-covalent)

MVL.1: 16 residues within 4Å: Chain A: T.55, I.58, W.62, R.64, D.65, P.218, S.219, D.220, N.302, H.350, W.357, E.393, R.405, F.408, W.410 Ligands: MVL.2 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:T.55, A:R.64, A:R.64, A:N.302, A:H.350, A:R.405, A:R.405 MVL.2: 10 residues within 4Å: Chain A: W.62, W.116, E.129, K.131, R.188, D.195, S.219, D.220, H.350 Ligands: MVL.1 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:E.129, A:E.129, A:R.188, A:R.188, A:D.195 pi-Cation interactions: A:H.350

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Males, A. et al., Distortion of mannoimidazole supports a B2,5boat transition state for the family GH125 alpha-1,6-mannosidase from Clostridium perfringens. Org.Biomol.Chem. (2019)

Release Date

2019-08-28

Peptides

Alpha-1,6-mannosidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Alpha-1,6-mannosidase

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