SMTL ID : 6rqo.1

Steady-state-SMX activated state structure of bacteriorhodopsin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-trimer

Ligands

3 x RET: RETINAL(Covalent)

RET.1: 16 residues within 4Å: Chain A: W.82, T.85, T.86, M.114, I.115, W.134, S.137, T.138, M.141, W.178, Y.181, P.182, W.185, D.208, A.211, K.212 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:T.86, A:I.115, A:M.141, A:Y.181, A:Y.181, A:Y.181, A:P.182, A:W.185, A:K.212 RET.2: 16 residues within 4Å: Chain B: W.82, T.85, T.86, M.114, I.115, W.134, S.137, T.138, M.141, W.178, Y.181, P.182, W.185, D.208, A.211, K.212 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:T.86, B:I.115, B:M.141, B:Y.181, B:Y.181, B:Y.181, B:P.182, B:W.185, B:K.212 RET.3: 16 residues within 4Å: Chain C: W.82, T.85, T.86, M.114, I.115, W.134, S.137, T.138, M.141, W.178, Y.181, P.182, W.185, D.208, A.211, K.212 9 PLIP interactions: 9 interactions with chain C Hydrophobic interactions: C:T.86, C:I.115, C:M.141, C:Y.181, C:Y.181, C:Y.181, C:P.182, C:W.185, C:K.212

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Weinert, T. et al., Proton uptake mechanism in bacteriorhodopsin captured by serial synchrotron crystallography. Science (2019)

Release Date

2019-07-17

Peptides

Bacteriorhodopsin: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

Membrane

We predict this structure to be a membrane protein.
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Bacteriorhodopsin