- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.99 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x CIT: CITRIC ACID(Non-functional Binders)
- 4 x KF5: 9-[(2~{S})-oxan-2-yl]purin-6-amine(Non-covalent)
KF5.2: 9 residues within 4Å:- Chain A: D.45, F.74, Y.75, N.122, S.158, T.161, A.162
- Chain D: I.187
- Ligands: MTA.3
4 PLIP interactions:3 interactions with chain A, 1 interactions with chain D- Hydrogen bonds: A:N.122, A:S.158, A:T.161
- Hydrophobic interactions: D:I.187
KF5.5: 9 residues within 4Å:- Chain B: D.45, F.74, Y.75, N.122, S.158, T.161, A.162
- Chain C: I.187
- Ligands: MTA.6
4 PLIP interactions:3 interactions with chain B, 1 interactions with chain C- Hydrogen bonds: B:N.122, B:S.158, B:T.161
- Hydrophobic interactions: C:I.187
KF5.8: 9 residues within 4Å:- Chain B: I.187
- Chain C: D.45, F.74, Y.75, N.122, S.158, T.161, A.162
- Ligands: MTA.9
6 PLIP interactions:5 interactions with chain C, 1 interactions with chain B- Hydrogen bonds: C:Y.75, C:N.122, C:S.158
- Water bridges: C:D.45, C:D.45
- Hydrophobic interactions: B:I.187
KF5.11: 9 residues within 4Å:- Chain A: I.187
- Chain D: D.45, F.74, Y.75, N.122, S.158, T.161, A.162
- Ligands: MTA.12
6 PLIP interactions:5 interactions with chain D, 1 interactions with chain A- Hydrogen bonds: D:Y.75, D:N.122, D:S.158
- Water bridges: D:D.45, D:D.45
- Hydrophobic interactions: A:I.187
- 4 x MTA: 5'-DEOXY-5'-METHYLTHIOADENOSINE(Non-covalent)
MTA.3: 11 residues within 4Å:- Chain A: N.122, E.123, A.162, Y.163, S.166, D.222
- Chain D: G.149, D.150, A.185, I.187
- Ligands: KF5.2
7 PLIP interactions:6 interactions with chain A, 1 interactions with chain D- Hydrogen bonds: A:N.122, A:E.123, A:Y.163, A:S.166, A:D.222, D:A.185
- pi-Stacking: A:Y.163
MTA.6: 11 residues within 4Å:- Chain B: N.122, E.123, A.162, Y.163, S.166, D.222
- Chain C: G.149, D.150, A.185, I.187
- Ligands: KF5.5
7 PLIP interactions:6 interactions with chain B, 1 interactions with chain C- Hydrogen bonds: B:N.122, B:E.123, B:Y.163, B:S.166, B:D.222, C:A.185
- pi-Stacking: B:Y.163
MTA.9: 11 residues within 4Å:- Chain B: G.149, D.150, A.185, I.187
- Chain C: N.122, E.123, A.162, Y.163, S.166, D.222
- Ligands: KF5.8
7 PLIP interactions:6 interactions with chain C, 1 interactions with chain B- Hydrogen bonds: C:N.122, C:E.123, C:Y.163, C:S.166, C:D.222, B:A.185
- pi-Stacking: C:Y.163
MTA.12: 11 residues within 4Å:- Chain A: G.149, D.150, A.185, I.187
- Chain D: N.122, E.123, A.162, Y.163, S.166, D.222
- Ligands: KF5.11
7 PLIP interactions:6 interactions with chain D, 1 interactions with chain A- Hydrogen bonds: D:N.122, D:E.123, D:Y.163, D:S.166, D:D.222, A:A.185
- pi-Stacking: D:Y.163
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Gelin, M. et al., From Substrate to Fragments to Inhibitor ActiveIn VivoagainstStaphylococcus aureus. Acs Infect Dis. (2020)
- Release Date
- 2020-02-19
- Peptides
- NAD kinase 1: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A
SMTL ID : 6rr2.1
Crystal structure of NAD kinase 1 from Listeria monocytogenes in complexe with an adenine derivative
NAD kinase 1
Toggle Identical (ABCD)Related Entries With Identical Sequence
2i1w.1 | 2i29.1 | 2i2a.1 | 2i2b.1 | 2i2c.1 | 2i2d.1 | 2i2e.1 | 3v7u.1 | 3v7w.1 | 3v7y.1 | 3v80.1 | 3v8m.1 | 3v8n.1 | 3v8p.1 | 4dy6.1 | 5dhp.1 | 5dhq.1 | 5dhr.1 | 5dhs.1 | 5dht.1 | 5dhu.1 | 6rbo.1 | 6rbp.1 | 6rbq.1 | 6rbr.1 | 6rbs.1 | 6rbt.1 | 6rbu.1 | 6rbv.1 | 6rbw.1 more...less...6rbx.1 | 6rby.1 | 6rbz.1 | 6rc0.1 | 6rc1.1 | 6rc2.1 | 6rc3.1 | 6rc4.1 | 6rc5.1 | 6rc6.1 | 6rg6.1 | 6rg7.1 | 6rg8.1 | 6rg9.1 | 6rga.1 | 6rgb.1 | 6rgc.1 | 6rgd.1 | 6rge.1 | 6rgf.1 | 6z61.1 | 6z64.1 | 6z65.1 | 7zz7.1 | 7zz9.1 | 7zza.1 | 7zzb.1 | 7zzc.1 | 7zzd.1 | 7zze.1 | 7zzf.1 | 7zzg.1 | 7zzh.1 | 7zzj.1 | 8a9v.1 | 8b47.1