SMTL ID : 6rr7.1

Influenza A virus (A/NT/60/1968) polymerase Heterotrimer bound to 3'5' vRNA promoter and capped RNA primer

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-mer

Ligands

1 x M7G- A- A- U- C- U: RNA (5'-D(*(M7G))-R(P*AP*AP*UP*CP*U)-3')(Non-covalent)

M7G-A-A-U-C-U.1: 37 residues within 4Å: Chain C: R.144, S.155, R.213, T.215, D.253, D.256, Q.257, I.260, I.261, R.264, T.303, E.304, Q.306, F.323, S.324, F.325, R.332, S.337, R.355, H.357, E.361, F.363, K.376, F.404, Q.406, N.422, R.423, L.428, N.429, M.431, H.432, Q.433, L.435, R.436, S.519, T.521, G.523 12 PLIP interactions: 12 interactions with chain C Hydrogen bonds: C:Q.306, C:R.355, C:K.376, C:N.429, C:S.519, C:T.521 Salt bridges: C:R.264, C:E.361, C:H.432 pi-Stacking: C:H.357, C:F.404 pi-Cation interactions: C:H.357

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fan, H. et al., Structures of influenza A virus RNA polymerase offer insight into viral genome replication. Nature (2019)

Release Date

2019-09-04

Peptides

Polymerase acidic protein: A
RNA-directed RNA polymerase catalytic subunit: B
Polymerase basic protein 2: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Polymerase acidic protein

RNA-directed RNA polymerase catalytic subunit

Polymerase basic protein 2

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