SMTL ID : 6rs1.1

Dipeptide Gly-Pro binds to a glycolytic enzyme fructose bisphosphate aldolase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-tetramer

Ligands

9 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 8 residues within 4Å: Chain A: K.225, L.265, S.266, G.267, S.295, F.296, G.297, R.298 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:S.266, A:S.266, A:G.267, A:G.297, A:R.298 Water bridges: A:R.144, A:K.225 Salt bridges: A:K.225, A:R.298 SO4.2: 6 residues within 4Å: Chain A: Q.156, I.159, R.203, A.207 Chain D: K.210, D.214 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain D Water bridges: A:A.207, D:K.210 Salt bridges: A:R.203, D:K.210 SO4.3: 6 residues within 4Å: Chain B: K.210, D.214 Chain C: Q.156, I.159, R.203, A.207 6 PLIP interactions: 3 interactions with chain B, 3 interactions with chain C Hydrogen bonds: B:D.214 Water bridges: B:K.210, C:A.207, C:A.207 Salt bridges: B:K.210, C:R.203 SO4.4: 6 residues within 4Å: Chain B: Q.156, I.159, R.203, A.207 Chain C: K.210, D.214 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain C Water bridges: B:A.207, C:K.210 Salt bridges: B:R.203, C:K.210 SO4.5: 5 residues within 4Å: Chain B: D.30, E.31, S.32, T.35, K.103 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:S.32, B:T.35 Water bridges: B:K.103, B:K.103, B:K.142 Salt bridges: B:K.103 SO4.6: 5 residues within 4Å: Chain C: D.30, E.31, S.32, T.35, K.103 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:S.32 Water bridges: C:K.142 Salt bridges: C:K.103, C:K.142 SO4.7: 4 residues within 4Å: Chain C: E.11, K.94, R.139 Chain D: K.327 3 PLIP interactions: 2 interactions with chain C, 1 interactions with chain D Salt bridges: C:K.94, C:R.139, D:K.327 SO4.8: 3 residues within 4Å: Chain D: S.32, T.35, K.103 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:D.30, D:S.32 Water bridges: D:K.142 Salt bridges: D:K.103 SO4.9: 5 residues within 4Å: Chain A: K.210, D.214 Chain D: Q.156, R.203, A.207 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain D Water bridges: A:K.210, D:A.207 Salt bridges: A:K.210, D:R.203

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wojciechowska, I. et al., Dipeptide Gly-Pro binds to a glycolytic enzyme fructose bisphosphate aldolase. To Be Published

Release Date

2020-04-01

Peptides

Fructose-bisphosphate aldolase 6, cytosolic: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Fructose-bisphosphate aldolase 6, cytosolic

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