SMTL ID : 6rty.1

Crystal structure of the Patched ectodomain in complex with nanobody NB64

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

hetero-1-1-mer

Ligands

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain A: A.171, A.173, N.177 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.171, A:A.171, A:N.177 NAG.2: 8 residues within 4Å: Chain A: D.183, A.185, N.214, S.215, T.216, K.218, L.219, V.220 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.183, A:T.216 NAG.3: 3 residues within 4Å: Chain A: A.277, Q.278, N.279 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.279

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rudolf, A.F. et al., The morphogen Sonic hedgehog inhibits its receptor Patched by a pincer grasp mechanism. Nat.Chem.Biol. (2019)

Release Date

2019-10-02

Peptides

Protein patched homolog 1: A
Llama-derived nanobody NB64: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Protein patched homolog 1

Llama-derived nanobody NB64

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