SMTL ID : 6ru5.1

human complement C3 in complex with the hC3Nb1 nanobody

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.90 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x NAG- NAG- BMA- MAN- MAN: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN.1: 4 residues within 4Å: Chain B: N.268, E.306, R.308, E.652 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:E.306, B:R.308, B:R.308, B:E.652

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 5 residues within 4Å: Chain A: M.61, N.63, L.479, K.480, A.481 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.63, A:A.481, A:A.481

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pedersen, D.V. et al., Structural Basis for Properdin Oligomerization and Convertase Stimulation in the Human Complement System. Front Immunol (2019)

Release Date

2019-08-21

Peptides

Complement C3: A
Complement C3: B
hC3Nb1: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Complement C3

Complement C3

hC3Nb1

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